PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

232175

Common Name

SELMODRAFT_449951

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 382aa MW: 43413.2 Da PI: 8.3064

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
232175	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	315	1.6e-96	9	378	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIlea 105 + L+ c eav s+d+ a a++++l+e+a p+gd++qR+++yf+ AL+ar+++++s+ y+ + + s +e+l+a+++ + +P+l + h+ +Nq Ilea 232175 9 DKLVLCGEAVWSDDFGSALAIMEELREQAGPEGDATQRVVHYFLHALNARMSNTGSRFYSVMCKARPS---IAETLKAVQMILKHTPFLGLPHFFTNQIILEA 108 68999****************************************************988666665...9*************************** PP GRAS 106 vegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVn 205 ++ge++vHi+Df+i++GlQWpaLlq La+R+egpp+lRiTgv+ p ++ +++etg+rL++ A+ g+pf+f+ l + ++e++e+ L++k +E+l+++ 232175 109 IKGERKVHIVDFGIMYGLQWPALLQLLAERKEGPPQLRITGVDLPPRAlnnHSGRIRETGSRLKRCAQDWGIPFKFRSL-SCAWESMEPGLLQLKDDEVLIIS 210 ***************************************99888899999********************5.889**************** PP GRAS 206 lvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrer 308 ++++ +l+d sv es++ + L +++l Pkv++ + ++ ++ Fl+rf eal +++a+f +++a ++r er+++E+ grei+n++aceg +r+er 232175 211 CSFKQTNLFDGSVIAESPKLQWLTRIRNLHPKVFIQSLASSNFAGPIFLQRFQEALVHHAAVFAAMDACISRMLPERRVIEQDKYGREIMNIIACEGLDRVER 313 *************************************************************************************************** PP GRAS 309 hetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 et ++W++ +aG++ +pls ++ k+ r ++ d +v+ + +++ lgW+d+ + + SaWr 232175 314 SETHQQWHHLAVKAGLEVIPLSPALFEESKAFARFYNRD-LTVNRDGEWMWLGWRDQIIHAYSAWR 378 **************************999988855.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	55.936	1	359	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.5E-94	9	378	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MGLRSHLLDK LVLCGEAVWS DDFGSALAIM EELREQAGPE GDATQRVVHY FLHALNARMS 60 NTGSRFYSVM CKARPSIAET LKAVQMILKH TPFLGLPHFF TNQIILEAIK GERKVHIVDF 120 GIMYGLQWPA LLQLLAERKE GPPQLRITGV DLPPRALNNH SGRIRETGSR LKRCAQDWGI 180 PFKFRSLSCA WESMEPGLLQ LKDDEVLIIS CSFKQTNLFD GSVIAESPKL QWLTRIRNLH 240 PKVFIQSLAS SNFAGPIFLQ RFQEALVHHA AVFAAMDACI SRMLPERRVI EQDKYGREIM 300 NIIACEGLDR VERSETHQQW HHLAVKAGLE VIPLSPALFE ESKAFARFYN RDLTVNRDGE 360 WMWLGWRDQI IHAYSAWRAA T*

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MGLRSHLLDK LVLCGEAVWS DDFGSALAIM EELREQAGPE GDATQRVVHY FLHALNARMS  60
NTGSRFYSVM CKARPSIAET LKAVQMILKH TPFLGLPHFF TNQIILEAIK GERKVHIVDF  120
GIMYGLQWPA LLQLLAERKE GPPQLRITGV DLPPRALNNH SGRIRETGSR LKRCAQDWGI  180
PFKFRSLSCA WESMEPGLLQ LKDDEVLIIS CSFKQTNLFD GSVIAESPKL QWLTRIRNLH  240
PKVFIQSLAS SNFAGPIFLQ RFQEALVHHA AVFAAMDACI SRMLPERRVI EQDKYGREIM  300
NIIACEGLDR VERSETHQQW HHLAVKAGLE VIPLSPALFE ESKAFARFYN RDLTVNRDGE  360
WMWLGWRDQI IHAYSAWRAA T*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_B	1e-45	9	378	34	419	Protein SHORT-ROOT
5b3h_E	1e-45	9	378	34	419	Protein SHORT-ROOT
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002973825.1	0.0	scarecrow-like protein 11
TrEMBL	D8RRY7	0.0	D8RRY7_SELML; GRAS family protein
STRING	EFJ24780	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP266	15	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	3e-92	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	232175
Entrez Gene	9643020

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]