PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 19890 | ||||||||
Common Name | SELMODRAFT_19890 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | ERF | ||||||||
Protein Properties | Length: 58aa MW: 6497.48 Da PI: 11.3401 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.2 | 4.9e-19 | 1 | 49 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp + r +lg+f tae+Aa a++aa+++++g 19890 1 YRGVRQRP-SGKWAAEIRDP-----HqgVRLWLGSFATAEKAALAYDAAARRIKG 49 9*******.7*********7.....336************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.4E-28 | 1 | 57 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.5E-12 | 1 | 49 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.2E-31 | 1 | 57 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.838 | 1 | 57 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.85E-17 | 1 | 56 | No hit | No description |
PRINTS | PR00367 | 3.0E-9 | 1 | 12 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.47E-21 | 1 | 57 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.0E-9 | 23 | 39 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 58 aa Download sequence Send to blast |
YRGVRQRPSG KWAAEIRDPH QGVRLWLGSF ATAEKAALAY DAAARRIKGK KAKLNFVD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-20 | 1 | 56 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 4e-20 | 1 | 56 | 6 | 62 | ATERF1 |
3gcc_A | 4e-20 | 1 | 56 | 6 | 62 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024539484.1 | 2e-33 | ethylene-responsive transcription factor 5-like | ||||
Refseq | XP_024539486.1 | 2e-33 | ethylene-responsive transcription factor 5-like | ||||
Refseq | XP_024539487.1 | 2e-33 | ethylene-responsive transcription factor 5-like | ||||
Refseq | XP_024539488.1 | 2e-33 | ethylene-responsive transcription factor 5-like | ||||
Refseq | XP_024539489.1 | 2e-33 | ethylene-responsive transcription factor 5-like | ||||
Refseq | XP_024539490.1 | 2e-33 | ethylene-responsive transcription factor 5-like | ||||
Refseq | XP_024539491.1 | 2e-33 | ethylene-responsive transcription factor 5-like | ||||
Refseq | XP_024539492.1 | 2e-33 | ethylene-responsive transcription factor 5-like | ||||
Refseq | XP_024545514.1 | 2e-33 | ethylene-responsive transcription factor 5-like | ||||
Refseq | XP_024545515.1 | 2e-33 | ethylene-responsive transcription factor 5-like | ||||
Refseq | XP_024545516.1 | 2e-33 | ethylene-responsive transcription factor 5-like | ||||
Refseq | XP_024545517.1 | 2e-33 | ethylene-responsive transcription factor 5-like | ||||
Refseq | XP_024545518.1 | 2e-33 | ethylene-responsive transcription factor 5-like | ||||
Refseq | XP_024545519.1 | 2e-33 | ethylene-responsive transcription factor 5-like | ||||
Refseq | XP_024545520.1 | 2e-33 | ethylene-responsive transcription factor 5-like | ||||
Swissprot | P42736 | 1e-24 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | D8S5W2 | 1e-33 | D8S5W2_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ20242 | 2e-34 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G43160.1 | 4e-14 | related to AP2 6 |
Link Out ? help Back to Top | |
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Phytozome | 19890 |
Entrez Gene | 9653898 |