PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 19636 | ||||||||
Common Name | SELMODRAFT_19636, SELMODRAFT_19637 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | Dof | ||||||||
Protein Properties | Length: 62aa MW: 7209.02 Da PI: 10.0212 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 59.9 | 5.1e-19 | 2 | 61 | 3 | 55 |
zf-Dof 3 ekalkcprCdstntkfCyynnysls....qPryfCkaCrryWtkGGalrnv...PvGggr 55 ++ +cprC+s nt+f yynn + qPry C++C+ Wt+GG +r+v P Gg + 19636 2 DNVYQCPRCQSYNTRFDYYNNEKSTgkrdQPRYICRSCKGKWTQGGKVRDVslsPTGGNK 61 67789****************86533444*********************9555556655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-9 | 1 | 62 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.7E-27 | 2 | 62 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 15.538 | 5 | 62 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 62 aa Download sequence Send to blast |
PDNVYQCPRC QSYNTRFDYY NNEKSTGKRD QPRYICRSCK GKWTQGGKVR DVSLSPTGGN 60 KR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024516314.1 | 1e-38 | uncharacterized protein LOC112341077 | ||||
Refseq | XP_024520303.1 | 1e-38 | uncharacterized protein LOC112342540 | ||||
TrEMBL | D8T545 | 6e-38 | D8T545_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ08195 | 1e-38 | (Selaginella moellendorffii) | ||||
STRING | EFJ08197 | 1e-38 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69570.1 | 7e-14 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | 19636 |
Entrez Gene | 9658509 | 9658511 |
Publications ? help Back to Top | |||
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