PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 19630 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | Dof | ||||||||
Protein Properties | Length: 59aa MW: 6880 Da PI: 10.5282 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.6 | 3.2e-39 | 4 | 59 | 2 | 57 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrk 57 +++ lkcprC+s ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk 19630 4 PNQVLKCPRCNSLNTKFCYYNNYSLTQPRHFCKNCRRYWTKGGALRNVPIGGGCRK 59 78999**************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-24 | 2 | 59 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.4E-33 | 6 | 59 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.059 | 8 | 59 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 10 | 46 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 59 aa Download sequence Send to blast |
KPQPNQVLKC PRCNSLNTKF CYYNNYSLTQ PRHFCKNCRR YWTKGGALRN VPIGGGCRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00570 | DAP | Transfer from AT5G60850 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024536180.1 | 6e-39 | dof zinc finger protein DOF2.4-like, partial | ||||
Refseq | XP_024539523.1 | 6e-39 | dof zinc finger protein DOF2.4-like, partial | ||||
Swissprot | Q8LDR0 | 1e-31 | DOF54_ARATH; Dof zinc finger protein DOF5.4 | ||||
TrEMBL | D8R3A8 | 7e-33 | D8R3A8_SELML; Uncharacterized protein | ||||
TrEMBL | D8RWQ9 | 2e-35 | D8RWQ9_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ20302 | 3e-36 | (Selaginella moellendorffii) | ||||
STRING | EFJ23299 | 3e-36 | (Selaginella moellendorffii) | ||||
STRING | EFJ33243 | 1e-33 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 6e-34 | OBF binding protein 4 |
Link Out ? help Back to Top | |
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Phytozome | 19630 |
Publications ? help Back to Top | |||
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