PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 19595 | ||||||||
Common Name | LEC1-1, LEC1-2, LEC1A1, LEC1A2, SELMODRAFT_450067, SELMODRAFT_450069 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | NF-YB | ||||||||
Protein Properties | Length: 90aa MW: 10535.1 Da PI: 6.5154 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 169.1 | 5.3e-53 | 1 | 90 | 2 | 91 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 reqdrf+Pianv+rim+kvlPa+akis+daket+qecvsefisf+tsea+dkcqre+rkti+++dllwa+++lGf+dy++pl+++l+kyr 19595 1 REQDRFMPIANVIRIMRKVLPAHAKISDDAKETIQECVSEFISFITSEANDKCQREQRKTITAEDLLWAMSKLGFDDYADPLSLFLHKYR 90 79***************************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.5E-47 | 1 | 90 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 6.83E-37 | 3 | 90 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.1E-27 | 6 | 70 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 3.9E-18 | 34 | 52 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 37 | 53 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 3.9E-18 | 53 | 71 | No hit | No description |
PRINTS | PR00615 | 3.9E-18 | 72 | 90 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
REQDRFMPIA NVIRIMRKVL PAHAKISDDA KETIQECVSE FISFITSEAN DKCQREQRKT 60 ITAEDLLWAM SKLGFDDYAD PLSLFLHKYR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 3e-57 | 1 | 90 | 7 | 96 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU019906 | 1e-152 | Selaginella moellendorffii CCAAT-box binding factor HAP3-like protein (LEC1A2) mRNA, partial cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002969299.1 | 5e-62 | nuclear transcription factor Y subunit B-9 | ||||
Refseq | XP_002986815.2 | 8e-62 | nuclear transcription factor Y subunit B-3 | ||||
Swissprot | Q84W66 | 2e-56 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | D8RE70 | 1e-60 | D8RE70_SELML; CCAAT-box binding factor HAP3-like protein | ||||
STRING | EFJ12145 | 2e-61 | (Selaginella moellendorffii) | ||||
STRING | EFJ29387 | 2e-61 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP168 | 17 | 170 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 7e-59 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
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Phytozome | 19595 |
Entrez Gene | 9660315 | 9662609 |