PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 179572
Common NameSELMODRAFT_179572
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB
Protein Properties Length: 790aa    MW: 89250.1 Da    PI: 7.5846
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
179572genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.6e-14853248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
           179572  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                     78*****************************.************986 PP
2Myb_DNA-binding33.21.2e-1060103248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
           179572  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPAQCLERYEKLL 103
                      68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-18960IPR009057Homeodomain-like
PfamPF139213.3E-131070No hitNo description
CDDcd001676.93E-121053No hitNo description
SuperFamilySSF466894.67E-2133108IPR009057Homeodomain-like
CDDcd116598.40E-3155106No hitNo description
SMARTSM007172.5E-1258105IPR001005SANT/Myb domain
PROSITE profilePS5129416.52958107IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-1461104IPR009057Homeodomain-like
PfamPF118312.7E-48404627IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 790 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPAQCLERYE KLLDAACYKD ESYEPADDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LAALQKRREL KAAGIGSRLR KRKFKGIDYN EEIPFEKRPP PGFYDVSNEE RSVAQPRFPT  240
NIEELEGRRR SDIEAQLRKQ DAARNKIAQR QDAPSAIMQI SKLNDPEAVR KRTKLMLPAP  300
QISDRELEEI VKMSSSADNL PGEEEGSSAT RALVANYNQT PRAGMTPART PQRTPGGKGD  360
AIMMEAENLL RLRETQTPLF GGENPELHPS DFSGVTPKKR EVQTPNVIAT PLTTPGGVGS  420
TPRIGSTPRE TSFAMTPKGT PIRDEFHINE GLELAADNPK AEKLRQAEAR RNLQASLKGL  480
PNAKNLYQIT VLGVPTEQEE ADEEMEADMA DVIANAQAEE DAREAAVLRK RSKVLQRGLP  540
RPPPATVELI RNTIPRYAEA DDPKALIQKE LVALLEHDNA KYPMTDKSGK PPPVIPELED  600
LDEQELKEAA REIEEEITLV RASLGHEGAD YTVVRDALAD DMTYFPQKNG YERASLASTA  660
ERLAAAQYEF EAVKKHIDGH TKKALKLEQK ISVLTGGYKT RGDGLWQQIE AAFKEAETLG  720
TELQCYRSLH QQEQLIAPRR IEAFQEEVKR QSDKESVLQM RYERRLSCRN DLRRLVTEHD  780
ARVESDPTV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.027623788Cell division cycle 5-like protein
5xjc_L0.027623788Cell division cycle 5-like protein
5yzg_L0.027623788Cell division cycle 5-like protein
5z56_L0.027623788Cell division cycle 5-like protein
5z57_L0.027623788Cell division cycle 5-like protein
5z58_L0.027623788Cell division cycle 5-like protein
6ff4_L0.027623788Cell division cycle 5-like protein
6ff7_L0.027623788Cell division cycle 5-like protein
6icz_L0.027623788Cell division cycle 5-like protein
6id0_L0.027623788Cell division cycle 5-like protein
6id1_L0.027623788Cell division cycle 5-like protein
6qdv_O0.027623788Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185202KRRELKAAGIGSRLRKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR8389505e-21Selaginella moellendorffii WOXII gene for putative transcription factor
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002982640.10.0cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLD8SGR20.0D8SGR2_SELML; Uncharacterized protein
STRINGEFJ163930.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP39481723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]