PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

17648

Common Name

SELMODRAFT_129122, SELMODRAFT_17648

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

ERF

Protein Properties

Length: 61aa MW: 7088.01 Da PI: 11.6657

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
17648	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.6	1.8e-19	4	54	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrdp++ + r +lg+f+tae+Aa a++ a+++++g+ 17648 4 RYRGVRKRP-WGRFAAEIRDPRT---KERRWLGTFDTAEDAALAYDIAARSMRGA 54 69*****.******954...4999*********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	4.9E-31	4	61	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.603	4	61	IPR001471	AP2/ERF domain
Pfam	PF00847	1.4E-12	4	53	IPR001471	AP2/ERF domain
CDD	cd00018	1.09E-23	4	60	No hit	No description
SMART	SM00380	1.0E-29	4	61	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.01E-22	4	61	IPR016177	DNA-binding domain
PRINTS	PR00367	2.1E-10	5	16	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.1E-10	27	43	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 61 aa Download sequence Send to blast
KEGRYRGVRK RPWGRFAAEI RDPRTKERRW LGTFDTAEDA ALAYDIAARS MRGAKARTNF 60 S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-21	4	60	5	62	ATERF1
3gcc_A	2e-21	4	60	5	62	ATERF1
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Functional Description ? help Back to Top
Source	Description
UniProt	Required for correct embryo patterning and cotyledon organogenesis. May regulate positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Involved in the cytokinin signaling pathway that promotes shoot regeneration, probably through transcriptional activation of target genes such as CUC1. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:16339853, ECO:0000269\|PubMed:17056621, ECO:0000269\|PubMed:17376809}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024369863.1	1e-32	uncharacterized protein LOC112279544 isoform X1
Swissprot	Q9FYK5	6e-29	ESR2_ARATH; Ethylene-responsive transcription factor ESR2
TrEMBL	D8SKC5	4e-35	D8SKC5_SELML; Uncharacterized protein (Fragment)
STRING	PP1S74_86V6.1	5e-32	(Physcomitrella patens)
STRING	EFJ09829	7e-36	(Selaginella moellendorffii)
STRING	EFJ15201	7e-36	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24590.1	5e-23	DORNROSCHEN-like

Link Out ? help Back to Top
Phytozome	17648
Entrez Gene	9628923 \| 9644192

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Thoma R,Chandler JW Polarity in the early floral meristem of Arabidopsis. Plant Signal Behav, 2015. 10(4): p. e992733 [PMID:25806573] Comelli P,Glowa D,Chandler JW,Werr W Founder-cell-specific transcription of the DORNRÖSCHEN-LIKE promoter and integration of the auxin response. J. Exp. Bot., 2016. 67(1): p. 143-55 [PMID:26428063] Seeliger I, et al. The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition. Mol. Genet. Genomics, 2016. 291(5): p. 1835-49 [PMID:27277595] Chandler JW,Werr W DORNRÖSCHEN, DORNRÖSCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis. J. Exp. Bot., 2017. 68(13): p. 3457-3472 [PMID:28859377] Durán-Medina Y,Serwatowska J,Reyes-Olalde JI,de Folter S,Marsch-Martínez N The AP2/ERF Transcription Factor DRNL Modulates Gynoecium Development and Affects Its Response to Cytokinin. Front Plant Sci, 2017. 8: p. 1841 [PMID:29123539]