PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 172537
Common NameSELMODRAFT_172537
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family Nin-like
Protein Properties Length: 778aa    MW: 85471.2 Da    PI: 7.0134
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
172537genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK85.54.6e-27504554252
  RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
             ek++ l++l+++F+++++dAA+++gvc+T+LKriCRqyGI+RWP+Rki+++
  172537 504 EKTVPLDVLQQHFAGSLRDAARNIGVCPTTLKRICRQYGISRWPSRKINKV 554
             789999*******************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.314493574IPR003035RWP-RK domain
PfamPF020422.1E-23507554IPR003035RWP-RK domain
SuperFamilySSF542771.31E-21670762No hitNo description
SMARTSM006665.6E-21677759IPR000270PB1 domain
PROSITE profilePS5174516.988677759IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2406.0E-21678758No hitNo description
PfamPF005641.7E-15678758IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MDDPGFPNSI PPAADWATNF LTSPPFQSGS FSSLLEDLLL AEPPPEDTAA SSQDQREGVA  60
AEEGEDEKSK ARGRKPHKSE LLGDVLRRIS CERTEFLAQV WVPTMRNSRV MLTTQDQPYA  120
VQPTKWDLVR YRTLSARYAF PVAGGSIGEV GGDVLPGLPG RVFSRMLPEW SPNVQFYDCK  180
DFLRVQDAAR CNVRGTLAVP VIEPNARECL AVIELVANVE KVGYESEMGM ICKALEASFV  240
LSSGREAVFE EISGVLLAVC EYHQLPLAQT WIPCFQSSGK SSGNKNLPCL VASHAPFHVR  300
DSSLEGFHRA CSQQKLEAGQ GVAGKASTTN QPSFTRDVKS YSIAEYPLVN YARYFKLGAA  360
VAIRLRSRLT GSDDYVLEFV LPLECTEEVE QCKLLDALSV TMQQACQSLR MVSSREVLEQ  420
RSVVSSPRFL ELHSGDEEMS GVVFDNSGLS VTTTATTTTT KATAKRKKLC GDDQSSYWSA  480
CSIQGDGSGA AKKKAGEKKR ATNEKTVPLD VLQQHFAGSL RDAARNIGVC PTTLKRICRQ  540
YGISRWPSRK INKVNRSLMK LQGVINSVEG ADRKVKLDIL TGEIAVNLLP AIKIEPRVHG  600
SHAALSVLDQ QKLSPERLIA KKQSSSPPLP PPPPPPPGTQ EHQSFYHQNQ ASYIDWPALS  660
NRVLCSKEGT NCFEERAITV KATLREDTIR FKMGMEFGFD TLKGEVAWRF KLDKEGFTLK  720
YMDDDAEWVV LNGDADLEEC LDVMRFSGSR VIKLVVQPVS NPNAGSPISP SFCSVNS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024532753.10.0protein NLP5
TrEMBLD8RM700.0D8RM70_SELML; NIN-like transcription factor
STRINGEFJ268370.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP2991697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.11e-117Nin-like family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]