PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 172537 | ||||||||
Common Name | SELMODRAFT_172537 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | Nin-like | ||||||||
Protein Properties | Length: 778aa MW: 85471.2 Da PI: 7.0134 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 85.5 | 4.6e-27 | 504 | 554 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++ l++l+++F+++++dAA+++gvc+T+LKriCRqyGI+RWP+Rki+++ 172537 504 EKTVPLDVLQQHFAGSLRDAARNIGVCPTTLKRICRQYGISRWPSRKINKV 554 789999*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.314 | 493 | 574 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.1E-23 | 507 | 554 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.31E-21 | 670 | 762 | No hit | No description |
SMART | SM00666 | 5.6E-21 | 677 | 759 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 16.988 | 677 | 759 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 6.0E-21 | 678 | 758 | No hit | No description |
Pfam | PF00564 | 1.7E-15 | 678 | 758 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 778 aa Download sequence Send to blast |
MDDPGFPNSI PPAADWATNF LTSPPFQSGS FSSLLEDLLL AEPPPEDTAA SSQDQREGVA 60 AEEGEDEKSK ARGRKPHKSE LLGDVLRRIS CERTEFLAQV WVPTMRNSRV MLTTQDQPYA 120 VQPTKWDLVR YRTLSARYAF PVAGGSIGEV GGDVLPGLPG RVFSRMLPEW SPNVQFYDCK 180 DFLRVQDAAR CNVRGTLAVP VIEPNARECL AVIELVANVE KVGYESEMGM ICKALEASFV 240 LSSGREAVFE EISGVLLAVC EYHQLPLAQT WIPCFQSSGK SSGNKNLPCL VASHAPFHVR 300 DSSLEGFHRA CSQQKLEAGQ GVAGKASTTN QPSFTRDVKS YSIAEYPLVN YARYFKLGAA 360 VAIRLRSRLT GSDDYVLEFV LPLECTEEVE QCKLLDALSV TMQQACQSLR MVSSREVLEQ 420 RSVVSSPRFL ELHSGDEEMS GVVFDNSGLS VTTTATTTTT KATAKRKKLC GDDQSSYWSA 480 CSIQGDGSGA AKKKAGEKKR ATNEKTVPLD VLQQHFAGSL RDAARNIGVC PTTLKRICRQ 540 YGISRWPSRK INKVNRSLMK LQGVINSVEG ADRKVKLDIL TGEIAVNLLP AIKIEPRVHG 600 SHAALSVLDQ QKLSPERLIA KKQSSSPPLP PPPPPPPGTQ EHQSFYHQNQ ASYIDWPALS 660 NRVLCSKEGT NCFEERAITV KATLREDTIR FKMGMEFGFD TLKGEVAWRF KLDKEGFTLK 720 YMDDDAEWVV LNGDADLEEC LDVMRFSGSR VIKLVVQPVS NPNAGSPISP SFCSVNS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024532753.1 | 0.0 | protein NLP5 | ||||
TrEMBL | D8RM70 | 0.0 | D8RM70_SELML; NIN-like transcription factor | ||||
STRING | EFJ26837 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP299 | 16 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76350.1 | 1e-117 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | 172537 |
Entrez Gene | 9650188 |
Publications ? help Back to Top | |||
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