PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 165556 | ||||||||
Common Name | SELMODRAFT_165311, SELMODRAFT_165556 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | bHLH | ||||||||
Protein Properties | Length: 247aa MW: 27113.7 Da PI: 6.7794 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.9 | 1.3e-11 | 75 | 121 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRdr+N++f eL l + + +K +Ka+iL Av+ I +L 165556 75 KACREKMRRDRLNDRFVELSAALEPG---RPPKSDKATILSDAVRVITQL 121 678**********************8...89****************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.42E-14 | 62 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.392 | 70 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.97E-8 | 74 | 126 | No hit | No description |
Pfam | PF00010 | 2.7E-9 | 75 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-9 | 76 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-13 | 77 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MSSPQSQKWM AFLSDTFLDE ESQNSSALFW GSQPSCDPVD CCVENDSSKV DSDEFEKTCP 60 KKRSREESCG APGNKACREK MRRDRLNDRF VELSAALEPG RPPKSDKATI LSDAVRVITQ 120 LRAEAQQLKE SNEQLRDGIK ELKAEKNELR EEKMRLKSEK DRLEQQLKTM AMPPSFMPHP 180 AAALHAHHAA AAAAAFHAQI QAASTKTGGA SAAGPLPGFP GMAMWQWMPP AVVDTSQDHV 240 LRPPVA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002962528.1 | 0.0 | transcription factor ILR3 | ||||
Refseq | XP_002962764.1 | 0.0 | transcription factor ILR3 | ||||
Swissprot | Q9FH37 | 1e-70 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | D8QU30 | 0.0 | D8QU30_SELML; Uncharacterized protein | ||||
STRING | EFJ35991 | 0.0 | (Selaginella moellendorffii) | ||||
STRING | EFJ36227 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP755 | 17 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 1e-69 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 165556 |
Entrez Gene | 9661126 | 9661763 |