PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 16039 | ||||||||
Common Name | SELMODRAFT_16039 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 169aa MW: 18858.6 Da PI: 10.2473 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.2 | 6.1e-13 | 11 | 53 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er+RR+++N+++ Lr ++Pk + K++Ka+i+ A++Y+++Lq 16039 11 SERKRRKKLNERLYSLRAIVPKiS------KMDKASIVADAIDYVQELQ 53 6*********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.434 | 3 | 52 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-17 | 8 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-15 | 9 | 58 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-17 | 10 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.16E-11 | 10 | 57 | No hit | No description |
Pfam | PF00010 | 1.4E-10 | 11 | 53 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 169 aa Download sequence Send to blast |
AAGSASKNLV SERKRRKKLN ERLYSLRAIV PKISKMDKAS IVADAIDYVQ ELQGKVQELQ 60 EDVSSLEAAE RREVELGSLF HRRRPALRQA AQPRLPQSSR GSSLSFVSIY KFVLLQLEVS 120 KLEEQVFYLR INCGNSDGVL IQLAKAFESI GLEFSSASLS SFQGKIINS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-14 | 11 | 56 | 12 | 57 | Transcription factor MYC2 |
5gnj_B | 2e-14 | 11 | 56 | 12 | 57 | Transcription factor MYC2 |
5gnj_E | 2e-14 | 11 | 56 | 12 | 57 | Transcription factor MYC2 |
5gnj_F | 2e-14 | 11 | 56 | 12 | 57 | Transcription factor MYC2 |
5gnj_G | 2e-14 | 11 | 56 | 12 | 57 | Transcription factor MYC2 |
5gnj_I | 2e-14 | 11 | 56 | 12 | 57 | Transcription factor MYC2 |
5gnj_M | 2e-14 | 11 | 56 | 12 | 57 | Transcription factor MYC2 |
5gnj_N | 2e-14 | 11 | 56 | 12 | 57 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 11 | 18 | ERKRRKKL |
2 | 81 | 88 | RRRPALRQ |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024534411.1 | 4e-80 | transcription factor ABORTED MICROSPORES | ||||
TrEMBL | D8RRH4 | 1e-115 | D8RRH4_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ25243 | 1e-116 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2753 | 13 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57150.3 | 6e-27 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 16039 |
Entrez Gene | 9642803 |
Publications ? help Back to Top | |||
---|---|---|---|
|