PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 157919 | ||||||||
Common Name | SELMODRAFT_157919 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | bHLH | ||||||||
Protein Properties | Length: 227aa MW: 25200.8 Da PI: 10.1963 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.1 | 2.1e-05 | 20 | 57 | 13 | 55 |
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R++i ++ eLr+++P+a +K s + Lek+++++k Lq 157919 20 RQQIQDRVRELRDIVPNA-----TKCSIDALLEKTIRHMKFLQ 57 89****************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 7.48E-4 | 3 | 61 | No hit | No description |
PROSITE profile | PS50888 | 11.109 | 7 | 56 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-6 | 20 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.0E-5 | 20 | 61 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010078 | Biological Process | maintenance of root meristem identity | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010479 | Biological Process | stele development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MTGRKRLRPG EAPRPRPKDR QQIQDRVREL RDIVPNATKC SIDALLEKTI RHMKFLQSVT 60 QHGDKWKAGG DVKGERSAEN SSGLENGASW AMELDAKGSG VPILVENLKQ PRQMLVEMLC 120 EERGLFWEIA DNIRGLGLTI LKGVMESRND KIWARFNVEV HAAKEVNRLK VVWNLTQLLR 180 PSGKNTSAPS FVGSEMSDVC SESFGSRFQP QVVASHGITV SPGSAW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that regulates root development; promotes the production of stele cells in roots. Coordinately controls the number of all vascular cell types by regulating the size of the pool of cells from which they arise. {ECO:0000269|PubMed:17626058}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002986361.2 | 1e-161 | transcription factor LHW isoform X2 | ||||
Swissprot | Q9XIN0 | 2e-61 | LHW_ARATH; Transcription factor LHW | ||||
TrEMBL | D8SSH3 | 1e-165 | D8SSH3_SELML; Uncharacterized protein | ||||
STRING | EFJ12570 | 1e-166 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1521 | 6 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31280.1 | 3e-51 | conserved peptide upstream open reading frame 7 |
Link Out ? help Back to Top | |
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Phytozome | 157919 |
Entrez Gene | 9649230 |