PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

149357

Common Name

SELMODRAFT_149357

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

G2-like

Protein Properties

Length: 274aa MW: 30096 Da PI: 7.3738

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
149357	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109.9	1.3e-34	43	97	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtpeLHerFveav+qLGG++kAtPk+++++m+vkgLtl+h+kSHLQkYRl 149357 43 KPRLRWTPELHERFVEAVTQLGGADKATPKSVMRVMGVKGLTLYHLKSHLQKYRL 97 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.192	40	100	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.6E-34	41	99	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.7E-24	43	97	IPR006447	Myb domain, plants
SuperFamily	SSF46689	9.85E-18	43	99	IPR009057	Homeodomain-like
Pfam	PF00249	1.8E-9	45	96	IPR001005	SANT/Myb domain
Pfam	PF14379	4.1E-24	135	179	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0010628	Biological Process	positive regulation of gene expression
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MYQMKKYPSP QLIPHRGGAM PAQSEPLYIA SGGDSVVSSI EPKPRLRWTP ELHERFVEAV 60 TQLGGADKAT PKSVMRVMGV KGLTLYHLKS HLQKYRLGMQ MHKENNGDGK KEGGAKAQTT 120 GSQNSMNSNL SDGYEINRAL SMQMEVQRKL HEQLEVQKHL QLRIEAQSKY LQNILEKARD 180 AFVGHIPTSA ELEAAHAELT ELAKGTLEGF EFTVPPLPEL PSPSSETKAA NQTPAAPTGK 240 KSTTSNLTLN QQQQQRDGQE LDSDQAAEID ITT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-22	43	96	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-22	43	96	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-22	43	96	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-22	43	96	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-22	43	96	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-22	43	96	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-22	43	96	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-22	43	96	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-22	43	96	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-22	43	96	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-22	43	96	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-22	43	96	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00378	DAP	Transfer from AT3G24120	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002974030.1	0.0	protein PHR1-LIKE 2 isoform X2
Swissprot	Q8LAJ7	8e-65	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	D8RS14	0.0	D8RS14_SELML; Uncharacterized protein
STRING	EFJ24985	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	3e-58	G2-like family protein

Link Out ? help Back to Top
Phytozome	149357
Entrez Gene	9656395

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]