PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 147012 | ||||||||
Common Name | SELMODRAFT_147012 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | NAC | ||||||||
Protein Properties | Length: 298aa MW: 33229 Da PI: 10.5744 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.5 | 2.6e-53 | 18 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglk 103 lp+GfrFhPtdeelvv yL+ k+e++++ + +i+e+d+yk++Pw+Lp+k+ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++ls kg++vg+k 147012 18 LPAGFRFHPTDEELVVSYLAIKAESRPFAI-PIIAEIDLYKFDPWELPEKALFGEREWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKPILS-KGKKVGVK 118 799************************999.88***************8888899***************************************.9999**** PP NAM 104 ktLvfykgrapkgektdWvmheyrl 128 k Lvfykg+apkg+kt+W+mheyrl 147012 119 KALVFYKGKAPKGSKTNWIMHEYRL 143 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-64 | 12 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.341 | 18 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-26 | 19 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MDSGGKPRTA PPSEQLNLPA GFRFHPTDEE LVVSYLAIKA ESRPFAIPII AEIDLYKFDP 60 WELPEKALFG EREWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKPILS KGKKVGVKKA 120 LVFYKGKAPK GSKTNWIMHE YRLADSSAKA AAAIPAMRKK GSLRLDDWVL CRIYKKSSGA 180 FKPMLSGSTT PRSSMKSEPP EEELDDVLAS LPDIDDNSRL YKIPPFGSSS PPPPPRRGRA 240 WNSRTRTTSG VRADRPSRGP SRDLPTICPP RCSTRDLLAR RRPSHFLLGE RSVENRC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-82 | 12 | 182 | 11 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-82 | 12 | 182 | 11 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-82 | 12 | 182 | 11 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-82 | 12 | 182 | 11 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-82 | 12 | 182 | 14 | 174 | NAC domain-containing protein 19 |
3swm_B | 6e-82 | 12 | 182 | 14 | 174 | NAC domain-containing protein 19 |
3swm_C | 6e-82 | 12 | 182 | 14 | 174 | NAC domain-containing protein 19 |
3swm_D | 6e-82 | 12 | 182 | 14 | 174 | NAC domain-containing protein 19 |
3swp_A | 6e-82 | 12 | 182 | 14 | 174 | NAC domain-containing protein 19 |
3swp_B | 6e-82 | 12 | 182 | 14 | 174 | NAC domain-containing protein 19 |
3swp_C | 6e-82 | 12 | 182 | 14 | 174 | NAC domain-containing protein 19 |
3swp_D | 6e-82 | 12 | 182 | 14 | 174 | NAC domain-containing protein 19 |
4dul_A | 4e-82 | 12 | 182 | 11 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-82 | 12 | 182 | 11 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abscisic acid-mediated stomatal closure (PubMed:25005917). Regulates the expression of NCED1, a gene involved in the biosynthesis of abscisic acid (ABA) (PubMed:25005917). Required for the stomatal closure induced by the bacterial pathogen Pseudomonas syringae pv tomato DC3000, but not for stomatal reopening (PubMed:25005917). {ECO:0000269|PubMed:25005917}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), dehydration and wounding. {ECO:0000269|PubMed:25005917}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024531118.1 | 1e-165 | NAC domain-containing protein 72 | ||||
Swissprot | Q9SQL0 | 7e-87 | JA2_SOLLC; NAC domain-containing protein JA2 | ||||
TrEMBL | D8RGI0 | 0.0 | D8RGI0_SELML; Uncharacterized protein | ||||
STRING | EFJ28600 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 3e-80 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | 147012 |
Entrez Gene | 9646613 |
Publications ? help Back to Top | |||
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