PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 140962
Common NameARP-1, SELMODRAFT_140962
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB
Protein Properties Length: 398aa    MW: 45003 Da    PI: 6.528
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
140962genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.2e-16857148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                     r+rW +eEd +l  +v+q+G ++W++I+++mg  + R +k+c +rw +yl
           140962  8 RQRWQPEEDAILCAYVTQYGADDWNLISERMGepLDRDPKSCHERWKNYL 57
                     89**********************************************97 PP
2Myb_DNA-binding38.42.8e-1263108148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+ T eE++l +++ +++G++ Wk+Ia++++ gRt+k +  +w  y+
           140962  63 KGPLTDEEQQLVIKLQTKYGNK-WKRIAAEVP-GRTAKRLGKWWEVYK 108
                      6899******************.*********.*******99998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.126357IPR017930Myb domain
SuperFamilySSF466898.07E-227102IPR009057Homeodomain-like
SMARTSM007172.9E-13759IPR001005SANT/Myb domain
CDDcd001673.62E-91057No hitNo description
Gene3DG3DSA:1.10.10.604.6E-211064IPR009057Homeodomain-like
PfamPF139217.2E-161173No hitNo description
PROSITE profilePS5129423.55458112IPR017930Myb domain
SMARTSM007172.6E-1062110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-1665109IPR009057Homeodomain-like
CDDcd001676.07E-767108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009615Biological Processresponse to virus
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010338Biological Processleaf formation
GO:0042742Biological Processdefense response to bacterium
GO:0045088Biological Processregulation of innate immune response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0050832Biological Processdefense response to fungus
GO:0000793Cellular Componentcondensed chromosome
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MSIATKDRQR WQPEEDAILC AYVTQYGADD WNLISERMGE PLDRDPKSCH ERWKNYLKPG  60
IKKGPLTDEE QQLVIKLQTK YGNKWKRIAA EVPGRTAKRL GKWWEVYKER LIKDKKKLLS  120
THAATGNCDS MVMEAMHLQA LAPGFSRPFL SSTPDLCVNG APAFSTSTPD ANDICGPPTV  180
CQDHFGNNAS GVTTTEALSG DETLLTLGPS TTFQKQFPME VVATSGVTMP KWIPKKLEIQ  240
IASTLTESSL SLSSSRTADE GLDCLDPASE SSDNNEGSNL SMFELFKELR EQRENWIQQK  300
KGISSKLKEL KQQLECEKAE KQRQKIQEVD ARVKALKEEK KQFLQKVEQD YSELVSNLER  360
DAEMKEKKLT EAWTLKYDKL VHTYERYTLS GPVFHAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3osf_A2e-1411114110MYB21
3osf_D2e-1411114110MYB21
3osg_A2e-1411114110MYB21
3osg_D2e-1411114110MYB21
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002962315.10.0transcription factor AS1
TrEMBLD8QT950.0D8QT95_SELML; Uncharacterized protein ARP-1
STRINGEFJ375750.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP50961421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.17e-72MYB family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]