PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 135843
Common NameSELMODRAFT_450988, SELMODRAFT_451281
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family TALE
Protein Properties Length: 276aa    MW: 31622.7 Da    PI: 7.2712
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
135843genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.83.6e-082232552254
               SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
  Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                +yp+++e+++L +++gL+ +q+ +WF N+R +
    135843 223 WPYPTEDEKARLVQETGLELKQINNWFINQRKR 255
               69*****************************87 PP
2ELK32.81.6e-11176197122
     ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
             ELKh+L+++Y+ +++++++E++
  135843 176 ELKHELKQGYRARIVDVREEIL 197
             9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.0E-16347IPR005540KNOX1
PfamPF037907.3E-17546IPR005540KNOX1
SMARTSM012564.9E-2159114IPR005541KNOX2
PfamPF037918.6E-1765113IPR005541KNOX2
PfamPF037893.9E-7176197IPR005539ELK domain
PROSITE profilePS512139.917176196IPR005539ELK domain
SMARTSM011880.0024176197IPR005539ELK domain
PROSITE profilePS5007111.515196259IPR001356Homeobox domain
SMARTSM003892.4E-11198263IPR001356Homeobox domain
SuperFamilySSF466894.71E-17198265IPR009057Homeodomain-like
CDDcd000869.58E-12199260No hitNo description
Gene3DG3DSA:1.10.10.602.9E-25203260IPR009057Homeodomain-like
PfamPF059208.1E-18216255IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MNAGLKADIV THPLYEQLLE AHVACLRIAT PVDQLSRIDG QISQCHHAIA KYSILANHQL  60
LCGSSKEELD HFMAHYVMLL KSFKDQLQHH VRVHAKEAVM ACWELEQSLI SLTAGAAPGE  120
GTGATMSDDE DEQQQPQQEQ QQQQQSDSDY WQDNLGFGPL IPTETERTLM ERVRQELKHE  180
LKQGYRARIV DVREEILRKR RAGKLPGDTT SVLKAWWHAH SKWPYPTEDE KARLVQETGL  240
ELKQINNWFI NQRKRNWHHH PSSSTNSSTK AKCKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-13199264873Homeobox protein PKNOX1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024522124.10.0homeobox protein knotted-1-like 7
RefseqXP_024522984.10.0homeobox protein knotted-1-like 7
SwissprotP480011e-137KNAT4_ARATH; Homeobox protein knotted-1-like 4
TrEMBLD8TAX10.0D8TAX1_SELML; KNOX transcription factor
TrEMBLD8TAX20.0D8TAX2_SELML; Uncharacterized protein
STRINGEFJ053620.0(Selaginella moellendorffii)
STRINGEFJ062000.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.11e-120KNOTTED1-like homeobox gene 4
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]