PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 131245
Common NameSELMODRAFT_131245, SELMODRAFT_28277
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ERF
Protein Properties Length: 81aa    MW: 9380.62 Da    PI: 11.6849
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
131245genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP269.65.4e-222171155
     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
            ++++GVr+++ +g+W+AeIrdp++   ++r++lg++++ae+Aa+a+++a+ +++g
  131245 21 TKFRGVRQRP-WGKWAAEIRDPVK---QARVWLGTYDSAEDAARAYDEAAIRFRG 71
            69********.**********654...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381235.7E-28180IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.52E-282181No hitNo description
PfamPF008472.7E-152171IPR001471AP2/ERF domain
PROSITE profilePS5103224.752279IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-332280IPR001471AP2/ERF domain
SMARTSM003801.1E-332281IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-242280IPR016177DNA-binding domain
PRINTSPR003671.7E-112334IPR001471AP2/ERF domain
PRINTSPR003671.7E-114561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
SARALKPKKP SDGSTRRHRR TKFRGVRQRP WGKWAAEIRD PVKQARVWLG TYDSAEDAAR  60
AYDEAAIRFR GIRAKLNFPD D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-242379663ATERF1
3gcc_A4e-242379663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00289DAPTransfer from AT2G33710Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024521924.13e-51ethylene-responsive transcription factor ABI4-like
SwissprotP930071e-27EF112_ARATH; Ethylene-responsive transcription factor ERF112
SwissprotQ9FH542e-27EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLD8T3I22e-50D8T3I2_SELML; Uncharacterized protein (Fragment)
STRINGEFJ063953e-51(Selaginella moellendorffii)
STRINGEFJ087883e-51(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.11e-21related to AP2 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]