PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 12696 | ||||||||
Common Name | SELMODRAFT_12699 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | GRAS | ||||||||
Protein Properties | Length: 393aa MW: 44663.8 Da PI: 5.3904 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 309.2 | 9.5e-95 | 6 | 393 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl........fsevsPilkfshlt 97 ++lLl+cA+a++s+d++ aq++++ l+++a+ dgdp+qR+aa f++AL +r++ +s+ ++ ++ s + + ss + + +l f++++P+++f++ + 12696 6 EQLLLHCATALESSDTTFAQQIMWVLNNIAAFDGDPNQRVAAWFLKALVSRVLL-CSRFSQVFQDSCLNLDASSASCFDNRLltpiqlakFVDLTPWHRFGFSA 108 689*************************************************97.77777777666666555555555554445556689************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 aN aIleav++ +++Hi+D++i++++QWp+L+++L++Rp+gpp s+R+ ++ + s+ +ee+g rL+ fA++ +v++ef+v+ + +dl + ++++ 12696 109 ANGAILEAVQSRDKIHILDLSITHCMQWPTLIESLSNRPGGPPnSVRLSVLTARPSVppfVDMPYEELGTRLRTFARSKRVNLEFEVV---SSSDLIPGLFQIR 209 ***************************************99888*******9977778889999***********************7...6688889****** PP GRAS 198 p.gEalaVnlvlqlhrll.........desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291 +Eal+Vn++l+lh+++ +++ l+s+rde+L+l++sl+P++v++ve++ad +s+s+++r+ a ++ + fd le+ l+r++e r +E+ +g 12696 210 DgDEALVVNCQLRLHYFPeiddhddphLDHHGLSSPRDEILHLIRSLNPDMVTLVEEDADVTSPSLVDRLRAAYNHLWIPFDLLESCLARNHELRLQYEAD-VG 312 999***************999998888677778889*****************************************************************.** PP GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 r+i n+vaceg++r+er e+ kW++r++ aGF+++ + +++ ++k +l++++ g+ ++ + + l+l+Wk++++v+++aW 12696 313 RKIDNIVACEGEARIERLESRDKWNQRMRFAGFRQLGFCDEVWGDVKWMLEQHA-TGWGLKRDAHDLLLTWKGHNVVFATAW 393 ******************************************************.99************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 46.605 | 1 | 375 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.3E-92 | 6 | 393 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
DAACVEQLLL HCATALESSD TTFAQQIMWV LNNIAAFDGD PNQRVAAWFL KALVSRVLLC 60 SRFSQVFQDS CLNLDASSAS CFDNRLLTPI QLAKFVDLTP WHRFGFSAAN GAILEAVQSR 120 DKIHILDLSI THCMQWPTLI ESLSNRPGGP PNSVRLSVLT ARPSVPPFVD MPYEELGTRL 180 RTFARSKRVN LEFEVVSSSD LIPGLFQIRD GDEALVVNCQ LRLHYFPEID DHDDPHLDHH 240 GLSSPRDEIL HLIRSLNPDM VTLVEEDADV TSPSLVDRLR AAYNHLWIPF DLLESCLARN 300 HELRLQYEAD VGRKIDNIVA CEGEARIERL ESRDKWNQRM RFAGFRQLGF CDEVWGDVKW 360 MLEQHATGWG LKRDAHDLLL TWKGHNVVFA TAW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_B | 2e-56 | 1 | 393 | 29 | 418 | Protein SHORT-ROOT |
5b3h_E | 2e-56 | 1 | 393 | 29 | 418 | Protein SHORT-ROOT |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024518620.1 | 0.0 | scarecrow-like protein 32 | ||||
Refseq | XP_024518622.1 | 0.0 | scarecrow-like protein 32 | ||||
TrEMBL | D8T0A9 | 0.0 | D8T0A9_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ09816 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2499 | 15 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49950.1 | 1e-116 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | 12696 |
Entrez Gene | 9628910 |
Publications ? help Back to Top | |||
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