PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 125080
Common NameSELMODRAFT_125080
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family WRKY
Protein Properties Length: 201aa    MW: 21940.5 Da    PI: 9.9671
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
125080genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.56.5e-29157360
            -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
    WRKY  3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
            DgynWrKYGqK+vkg ++prsYYrCt+++C++kk vers   +++++i+Y+g+H h+k
  125080  1 DGYNWRKYGQKQVKGCDNPRSYYRCTHPDCSAKKLVERSV-SGETTQIVYKGDHSHSK 57
            9***************************************.9**************85 PP
2WRKY107.85.3e-34116174159
             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
             ldDgy+WrKYGqK+vkg+++prsYYrCt +gCpv+k+ver+a+dpk+v++ Yeg+H+h+
  125080 116 LDDGYRWRKYGQKVVKGNPNPRSYYRCTNPGCPVRKHVERAADDPKAVITSYEGKHDHD 174
             59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.469158IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.5E-24158IPR003657WRKY domain
PfamPF031064.4E-23155IPR003657WRKY domain
SMARTSM007741.3E-27157IPR003657WRKY domain
SuperFamilySSF1182902.48E-22158IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.7E-36104176IPR003657WRKY domain
SuperFamilySSF1182909.55E-30108176IPR003657WRKY domain
PROSITE profilePS5081137.08111176IPR003657WRKY domain
SMARTSM007741.4E-39116175IPR003657WRKY domain
PfamPF031069.9E-27117173IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
DGYNWRKYGQ KQVKGCDNPR SYYRCTHPDC SAKKLVERSV SGETTQIVYK GDHSHSKPQM  60
IRRLAVTRVQ PDDGSKRTLV LVPGGATPTP AQRHASNSNS SDAPVVVHTN SEVDVLDDGY  120
RWRKYGQKVV KGNPNPRSYY RCTNPGCPVR KHVERAADDP KAVITSYEGK HDHDTPAARG  180
GAASTSTTST KLLPAPPLSA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-381177878Probable WRKY transcription factor 4
2lex_A1e-381177878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024516484.11e-138WRKY transcription factor WRKY24
SwissprotQ6VWJ63e-70WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLD8SU561e-145D8SU56_SELML; Uncharacterized protein (Fragment)
STRINGEFJ119501e-146(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.27e-72WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]