PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 121275
Common NameMADS3-1, MADS3-2, SELMODRAFT_449545, SELMODRAFT_449594
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MIKC_MADS
Protein Properties Length: 228aa    MW: 26079.9 Da    PI: 10.1492
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
121275genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.21.4e-30959151
            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
            krien +nrqvtfskRr g+lKKA+ELSvLCda++a+iifsstgkl+eyss
  121275  9 KRIENATNRQVTFSKRRGGLLKKAHELSVLCDAQIALIIFSSTGKLFEYSS 59
            79***********************************************96 PP
2K-box904.5e-3080172698
   K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
             ++s  ++++e++ +el +Lk++ie+Lq+++Rh++GedL  L +k+LqqLe++L ++l++iR++K++l+ eq++el++ke  lq+en  Lr+k+
  121275  80 NTSIVDHDNERWGRELIRLKQQIEQLQQTHRHMVGEDLIHLGIKDLQQLEHRLLSGLERIRARKDQLIAEQLDELRRKELHLQRENDHLRRKV 172
             555678889**********************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.1E-44160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.585161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-35292IPR002100Transcription factor, MADS-box
CDDcd002657.53E-46280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-32323IPR002100Transcription factor, MADS-box
PfamPF003198.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-323859IPR002100Transcription factor, MADS-box
PfamPF014865.9E-2886172IPR002487Transcription factor, K-box
PROSITE profilePS5129715.89488178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MGRGKIEIKR IENATNRQVT FSKRRGGLLK KAHELSVLCD AQIALIIFSS TGKLFEYSSS  60
STSMKEILDR YGRYPEGNHN TSIVDHDNER WGRELIRLKQ QIEQLQQTHR HMVGEDLIHL  120
GIKDLQQLEH RLLSGLERIR ARKDQLIAEQ LDELRRKELH LQRENDHLRR KVTGGKPLAT  180
LNVVATPLET REPPSVTLPF SIHGQLAPLP AFVEHHPQML QTSLHLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-26193194MEF2C
5f28_B6e-26193194MEF2C
5f28_C6e-26193194MEF2C
5f28_D6e-26193194MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024515500.11e-161MADS-box transcription factor 23 isoform X5
RefseqXP_024545729.11e-161MADS-box transcription factor 23 isoform X3
SwissprotQ9XGJ46e-60GGM13_GNEGN; MADS-box protein GGM13
TrEMBLD8SNH91e-160D8SNH9_SELML; MADS-domain transcription factor
STRINGEFJ131511e-161(Selaginella moellendorffii)
STRINGEFJ141711e-161(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.17e-56MIKC_MADS family protein
Publications ? help Back to Top
  1. Winter KU, et al.
    MADS-box genes reveal that gnetophytes are more closely related to conifers than to flowering plants.
    Proc. Natl. Acad. Sci. U.S.A., 1999. 96(13): p. 7342-7
    [PMID:10377416]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]