PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 113962
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family M-type_MADS
Protein Properties Length: 71aa    MW: 8076.59 Da    PI: 10.0778
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
113962genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.11.1e-28959151
            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
            k+ien +nrqvt+skRr+g+ KKA+ELS+LCd+++a+i+fs++gkl  y++
  113962  9 KKIENATNRQVTYSKRRTGLVKKAYELSTLCDIDIALIMFSPSGKLTQYAT 59
            78***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.777161IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-27260IPR002100Transcription factor, MADS-box
CDDcd002651.43E-32265No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-26323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MGRVKLEIKK IENATNRQVT YSKRRTGLVK KAYELSTLCD IDIALIMFSP SGKLTQYATD  60
MRYLICLFIN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A9e-20161162MEF2 CHIMERA
6byy_B9e-20161162MEF2 CHIMERA
6byy_C9e-20161162MEF2 CHIMERA
6byy_D9e-20161162MEF2 CHIMERA
6bz1_A8e-20161162MEF2 CHIMERA
6bz1_B8e-20161162MEF2 CHIMERA
6bz1_C8e-20161162MEF2 CHIMERA
6bz1_D8e-20161162MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM9998051e-102Selaginella moellendorffii mRNA for MADS1 protein, allele 2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002981044.12e-36agamous-like MADS-box protein AGL3
SwissprotQ9LM464e-27AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLD8SCP25e-35D8SCP2_SELML; MADS-domain transcription factor
TrEMBLH1ZSL51e-36H1ZSL5_9TRAC; MADS1 protein (Fragment)
STRINGEFJ177459e-36(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.12e-29AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]