PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 113921
Common NameSELMODRAFT_113921
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB
Protein Properties Length: 795aa    MW: 89715 Da    PI: 8.6155
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
113921genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.83.2e-10853248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g W   Ede+l+ av ++ +++W +I++ +  ++++kqck rw+ +l
           113921  8 GVWKNTEDEILKVAVMKYAKNQWPRISSLLA-RKSAKQCKARWYEWL 53
                     78*****************************.************986 PP
2Myb_DNA-binding32.91.5e-1060103248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc  r+ k+l
           113921  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPAQCLQRYEKLL 103
                      68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.633253IPR017930Myb domain
SMARTSM007171.3E-11655IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-16960IPR009057Homeodomain-like
PfamPF139212.6E-121070No hitNo description
CDDcd001672.17E-91053No hitNo description
SuperFamilySSF466893.59E-2133108IPR009057Homeodomain-like
PROSITE profilePS5129421.07354107IPR017930Myb domain
CDDcd116594.10E-3055106No hitNo description
SMARTSM007173.2E-1258105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-1461104IPR009057Homeodomain-like
PfamPF118312.7E-43400587IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 795 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKV AVMKYAKNQW PRISSLLARK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPAQCLQRYE KLLDAACYKD ESYEPADDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LAALQKRREL KAACIGSRLR KRKFKGIDYN EEIPFEKRPP PGFYDVANEE RSVAQPRFPT  240
NVEELEGRRR SDIEAELRKQ DTARNKIAQR QDAPSAIMQI SKLNDPEAVR KRTKLMLPAP  300
QISDRELEEI VKMSSSADNL PGEDEGSSAT RALVANYNQT PRAGMTPART PGGKGDAIMM  360
EAENLLRLRE TQTPLFGGEN PELHPSDFSG VTPKKREVQT PNVIATPLTT PGGVGSTPRI  420
GSTPRETSFA MTPKGTPIRD EFHINEGLEL AADNPKAEKL RQAEARRNLQ ASLKGLPNAK  480
NLYQITVLGV PTAQEEAEEE MEADMADVIA NAQAEEDARE AAALRKRSKV LQQGLPRPPP  540
ATVELIRNTI PRHAEADDPK ALIQKELVAL LEHDNAKYPM TDKSGKSPPM KDMSCQRYVC  600
VFYLRWLLRS YTPLAQAAWE IEQEITLVRA SLGQEGADYT AVRDALADDM TYFPQKNGYE  660
RATLASTAER LAAAQYEFEA AKKHIDGHTK KALKLEQKIS VLTGGYKTRG DGLWQQIEAA  720
FKEAETLGTE LQCYRSLHQQ EQLIAPRRIE ALQEEVSDKE SFLQMRYERR LFCGNDLRRL  780
VAEHDARVGS DPTV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.027673788Cell division cycle 5-like protein
5xjc_L0.027673788Cell division cycle 5-like protein
5yzg_L0.027673788Cell division cycle 5-like protein
5z56_L0.027673788Cell division cycle 5-like protein
5z57_L0.027673788Cell division cycle 5-like protein
5z58_L0.027673788Cell division cycle 5-like protein
6ff4_L0.027673788Cell division cycle 5-like protein
6ff7_L0.027673788Cell division cycle 5-like protein
6icz_L0.027673788Cell division cycle 5-like protein
6id0_L0.027673788Cell division cycle 5-like protein
6id1_L0.027673788Cell division cycle 5-like protein
6qdv_O0.027673788Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185202KRRELKAACIGSRLRKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002982640.10.0cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLD8SCI60.0D8SCI6_SELML; Uncharacterized protein
STRINGEFJ177180.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP39481723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]