PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 110042 | ||||||||
Common Name | SELMODRAFT_110042 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | MYB_related | ||||||||
Protein Properties | Length: 155aa MW: 17107.2 Da PI: 10.445 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 3e-16 | 1 | 40 | 6 | 47 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +eE+e+l+ a++ +G++ W+tIar ++ gRt++ +k++w+ + 110042 1 EEEEERLLGAHRFHGNK-WATIARLFP-GRTDNAVKNHWHVV 40 7****************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-15 | 1 | 39 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.914 | 1 | 45 | IPR017930 | Myb domain |
SMART | SM00717 | 6.1E-7 | 1 | 43 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.19E-12 | 1 | 48 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.6E-13 | 1 | 39 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.63E-10 | 1 | 41 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
EEEEERLLGA HRFHGNKWAT IARLFPGRTD NAVKNHWHVV MARKYRERTR TYGRSPNAAS 60 TGKNTVTTAV KSDHPAPPSQ QLDHHNLLLN RGSTPVLLPS KRSLVDAEDR PTSSSATAAA 120 AAAAWMDSFH HRASNLMGFN PGRVECHHGL IYIV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002979033.2 | 5e-79 | transcription factor MYB101 | ||||
TrEMBL | D8S6T0 | 1e-110 | D8S6T0_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ19989 | 1e-111 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 7e-26 | myb domain protein 105 |
Link Out ? help Back to Top | |
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Phytozome | 110042 |
Entrez Gene | 9659300 |
Publications ? help Back to Top | |||
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