PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 110042
Common NameSELMODRAFT_110042
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB_related
Protein Properties Length: 155aa    MW: 17107.2 Da    PI: 10.445
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
110042genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.23e-16140647
                     HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +eE+e+l+ a++ +G++ W+tIar ++ gRt++ +k++w+ +
           110042  1 EEEEERLLGAHRFHGNK-WATIARLFP-GRTDNAVKNHWHVV 40
                     7****************.*********.***********976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-15139IPR009057Homeodomain-like
PROSITE profilePS5129422.914145IPR017930Myb domain
SMARTSM007176.1E-7143IPR001005SANT/Myb domain
SuperFamilySSF466894.19E-12148IPR009057Homeodomain-like
PfamPF002499.6E-13139IPR001005SANT/Myb domain
CDDcd001673.63E-10141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
EEEEERLLGA HRFHGNKWAT IARLFPGRTD NAVKNHWHVV MARKYRERTR TYGRSPNAAS  60
TGKNTVTTAV KSDHPAPPSQ QLDHHNLLLN RGSTPVLLPS KRSLVDAEDR PTSSSATAAA  120
AAAAWMDSFH HRASNLMGFN PGRVECHHGL IYIV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002979033.25e-79transcription factor MYB101
TrEMBLD8S6T01e-110D8S6T0_SELML; Uncharacterized protein (Fragment)
STRINGEFJ199891e-111(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.17e-26myb domain protein 105
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]