PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 109349 | ||||||||
Common Name | SELMODRAFT_109349 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 374aa MW: 41777.1 Da PI: 7.8858 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 81.9 | 9e-26 | 68 | 152 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++aLi+ rrem++ ++++k++k+lW+ +s+km+ergf rsp++C +kw+nl k+ykk ++++k++ +s +++ f++le 109349 68 WAQEEIRALIAHRREMDSLFNTSKSNKHLWDLISSKMKERGFDRSPTMCIDKWRNLLKEYKKARHHDKNGGGGSANKVGCFKELE 152 **********************************************************************999999999999998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-4 | 59 | 129 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.095 | 60 | 124 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.7E-6 | 64 | 126 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 5.51E-30 | 66 | 131 | No hit | No description |
Pfam | PF13837 | 1.8E-18 | 67 | 153 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 374 aa Download sequence Send to blast |
MIDCVANGGG PVSEIVEAAP APSIPTIAAT RRSNSPQQHQ QQQGLMLGSG DLCDDHDVKA 60 PKKRAETWAQ EEIRALIAHR REMDSLFNTS KSNKHLWDLI SSKMKERGFD RSPTMCIDKW 120 RNLLKEYKKA RHHDKNGGGG SANKVGCFKE LEDLLSERAR LNPYKSPSKL DTSPKDLFFL 180 SFSVTTTSRN QFNLESRLES EANHHLSSSN DLAVANGWNW KEGLPGGAQR SSLPAGKIIT 240 IRYNSVTRRV GIDGSPDSIR EAIKAAFRLR TKRAFWLEDE DGVVWSIDRD MPLGSYILNL 300 DEGVTIKVCL YDESDRLTGA TEDKTLFTED NFKDFLARRG WTGVRQVGGF QDVEFLHELH 360 PLCVYQRAGL LGA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 2e-37 | 62 | 150 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00640 | PBM | Transfer from MDP0000164819 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024539329.1 | 0.0 | trihelix transcription factor GT-1 | ||||
Swissprot | Q9FX53 | 1e-111 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | D8S5M7 | 0.0 | D8S5M7_SELML; Uncharacterized protein | ||||
STRING | EFJ20200 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5933 | 13 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G13450.1 | 1e-111 | Trihelix family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 109349 |
Entrez Gene | 9653855 |
Publications ? help Back to Top | |||
---|---|---|---|
|