PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 105213 | ||||||||
Common Name | SELMODRAFT_105213 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | NAC | ||||||||
Protein Properties | Length: 176aa MW: 20192.2 Da PI: 10.2747 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.4 | 1.9e-55 | 15 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglk 103 lp+GfrFhPtdeelvv+yL+kk+e+k++++ vi+evd+yk+ PwdLp+k++ +e+ewyfF++rd+ky++g r+nra+ sgyWkatg+dk+++++++++vg+k 105213 15 LPAGFRFHPTDEELVVHYLCKKAESKPFPV-PVIAEVDLYKFSPWDLPSKAYFGEREWYFFTPRDRKYPNGARPNRAAGSGYWKATGTDKPIHTRGNRKVGVK 116 799***************************.89***************988999************************************************* PP NAM 104 ktLvfykgrapkgektdWvmheyrl 128 k Lvfy+g+apkg+kt+W+mheyrl 105213 117 KALVFYDGKAPKGVKTNWIMHEYRL 141 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.62E-66 | 8 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.007 | 15 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.9E-28 | 16 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MAPAKFSTSS SQLHLPAGFR FHPTDEELVV HYLCKKAESK PFPVPVIAEV DLYKFSPWDL 60 PSKAYFGERE WYFFTPRDRK YPNGARPNRA AGSGYWKATG TDKPIHTRGN RKVGVKKALV 120 FYDGKAPKGV KTNWIMHEYR LVESSSHKPA KDHKSLRLDD WVLCRIYEKT SGAFKV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-83 | 1 | 171 | 1 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269|PubMed:22278768}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00058 | PBM | Transfer from AT1G61110 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269|PubMed:18813954}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002976404.2 | 1e-129 | NAC domain-containing protein 72 | ||||
Swissprot | Q8H4S4 | 2e-83 | NAC10_ORYSJ; NAC domain-containing protein 10 | ||||
TrEMBL | D8RZ08 | 1e-128 | D8RZ08_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ22664 | 1e-128 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 3e-85 | NAC domain containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | 105213 |
Entrez Gene | 9646570 |
Publications ? help Back to Top | |||
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