PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 105005 | ||||||||
Common Name | SELMODRAFT_105005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | LBD | ||||||||
Protein Properties | Length: 114aa MW: 12339.4 Da PI: 8.7202 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 105.4 | 4.8e-33 | 3 | 104 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ r+ +Pv Gavg++++++++++q+++e++l 105005 3 SCNGCRVLRKGCSDSCILRPCLqwiegPEAQGHATVFVAKFFGRAGLMNFISAVPENQRPALFQSLLYEACGRTVNPVFGAVGLLWSGSWHVCQAAVETVLK 104 6***********************************************************************************************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.401 | 2 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.1E-28 | 3 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
RMSCNGCRVL RKGCSDSCIL RPCLQWIEGP EAQGHATVFV AKFFGRAGLM NFISAVPENQ 60 RPALFQSLLY EACGRTVNPV FGAVGLLWSG SWHVCQAAVE TVLKGGSLQA LKQP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002976218.2 | 8e-80 | LOB domain-containing protein 39 | ||||
Refseq | XP_002987125.2 | 8e-80 | LOB domain-containing protein 39 | ||||
Swissprot | Q9SN23 | 1e-66 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | D8RYR0 | 3e-78 | D8RYR0_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ22478 | 4e-79 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 5e-69 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | 105005 |
Entrez Gene | 9648679 |
Publications ? help Back to Top | |||
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