PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 104980 | ||||||||
Common Name | SELMODRAFT_104980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | ERF | ||||||||
Protein Properties | Length: 327aa MW: 35779.9 Da PI: 8.5181 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.6 | 1.8e-19 | 131 | 180 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++GVr+++ +g+WvAeIr p++ r+r +lg+f taeeAa a+++a+ kl+ge 104980 131 FRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFETAEEAAFAYDQAAYKLRGE 180 8******9.**********955...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.47E-31 | 129 | 189 | No hit | No description |
SMART | SM00380 | 1.3E-35 | 130 | 193 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-23 | 130 | 188 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-31 | 130 | 188 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.734 | 130 | 187 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-10 | 131 | 142 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.2E-13 | 131 | 180 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-10 | 153 | 169 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MVDRPRSDNA ISALIDLAAA SSSSIRDGDQ QIPLAQSPAW LLGDRHHHQS TPNYPQILSL 60 GGQIPLINVA SFQQGSIDLT SSIVNPGHNR ENQQQIILNS STGSIEIPAL DKNLVESTSN 120 RSSPVVGTKL FRGVRQRHWG KWVAEIRLPR NRTRLWLGTF ETAEEAAFAY DQAAYKLRGE 180 YARLNFPHLI HHLRSRFSSS SSSSSSSSPS MPSMSIPISR DFSRSPSMLD AKIEALSNRV 240 CFKQRRQQHQ PREIEEMEHM GRAKSEPGPG GVSSAQNGSS SGKGVMDGDH WAEIDESLHK 300 STPIADLTWD VLGGDSSGSS RVPIQL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-20 | 129 | 187 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00026 | PBM | Transfer from AT1G78080 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002976369.1 | 0.0 | ethylene-responsive transcription factor ERF057 isoform X1 | ||||
TrEMBL | D8RYT7 | 0.0 | D8RYT7_SELML; Uncharacterized protein | ||||
STRING | EFJ22629 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 4e-25 | related to AP2 4 |
Link Out ? help Back to Top | |
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Phytozome | 104980 |
Entrez Gene | 9648799 |
Publications ? help Back to Top | |||
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