PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 104978 | ||||||||
Common Name | SELMODRAFT_104978 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | ERF | ||||||||
Protein Properties | Length: 185aa MW: 20369.1 Da PI: 4.9301 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.8 | 3.2e-19 | 19 | 68 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++l+g 104978 19 VYRGVRRRS-WGKWVSEIREPKK---KSRIWLGSFPTPEMAARAHDVAALSLKG 68 69****887.**********854...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-31 | 18 | 78 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.775 | 19 | 76 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-35 | 19 | 82 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.9E-13 | 19 | 68 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-21 | 19 | 78 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.77E-31 | 20 | 78 | No hit | No description |
PRINTS | PR00367 | 3.6E-10 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-10 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MEEAKEKPSF GSSGAHHRVY RGVRRRSWGK WVSEIREPKK KSRIWLGSFP TPEMAARAHD 60 VAALSLKGDA ALLNFPESAD SLPRPSALSP KAIQEAAVAA AFAFVDDHTK NEEFQDTSTA 120 STATTVINYV DEDLVFMMPS VMLSHMAQAL LVAPPPMWEG GLSVVEVEVD EEIRLWNFEE 180 LNLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-20 | 14 | 76 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024516710.1 | 1e-99 | ethylene-responsive transcription factor TINY | ||||
Swissprot | Q9LYD3 | 2e-44 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | D8RZ29 | 1e-131 | D8RZ29_SELML; Uncharacterized protein | ||||
STRING | EFJ22674 | 1e-132 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 2e-44 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | 104978 |
Entrez Gene | 9646581 |
Publications ? help Back to Top | |||
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