PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 102790 | ||||||||
Common Name | SELMODRAFT_128905 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | DBB | ||||||||
Protein Properties | Length: 96aa MW: 10339.9 Da PI: 6.6333 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.3 | 4.9e-06 | 4 | 44 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38 + C+ + ++ ++C+ + ++C C l+ H g H+ 102790 4 KLCDGCRVSNAAIYCTADMAYICLGCDLKVH-GanklasrHE 44 57*****888*********************.5466777776 PP | |||||||
2 | zf-B_box | 29.6 | 1.4e-09 | 45 | 90 | 2 | 41 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 + ++C+ +e+ ++ C+ + lC++C + +H+ H++v 102790 45 RVWICEVCEHAPAAVICKADAAALCASCDTDIHSAnplanrHERVA 90 5789*****************************6688888898875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 9.4E-10 | 1 | 48 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.67 | 1 | 48 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.04 | 44 | 91 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 7.1E-8 | 45 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.02E-5 | 47 | 79 | No hit | No description |
SMART | SM00336 | 3.4E-8 | 49 | 91 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 96 aa Download sequence Send to blast |
SMTKLCDGCR VSNAAIYCTA DMAYICLGCD LKVHGANKLA SRHERVWICE VCEHAPAAVI 60 CKADAAALCA SCDTDIHSAN PLANRHERVA VTPFFE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002975083.2 | 1e-64 | zinc finger protein CONSTANS-LIKE 3 | ||||
Swissprot | Q940T9 | 1e-43 | COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4 | ||||
TrEMBL | D8RUZ5 | 1e-63 | D8RUZ5_SELML; Uncharacterized protein (Fragment) | ||||
TrEMBL | D8T014 | 4e-63 | D8T014_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ10003 | 6e-64 | (Selaginella moellendorffii) | ||||
STRING | EFJ23869 | 2e-64 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP691 | 17 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 1e-45 | CONSTANS-like 4 |
Link Out ? help Back to Top | |
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Phytozome | 102790 |
Entrez Gene | 9662280 |
Publications ? help Back to Top | |||
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