PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 102071 | ||||||||
Common Name | SELMODRAFT_450946 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | GRAS | ||||||||
Protein Properties | Length: 146aa MW: 16494.8 Da PI: 9.0037 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 81.1 | 1.9e-25 | 16 | 144 | 248 | 374 |
GRAS 248 hnsesFlerflealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sd 347 ns+s+++r ea+e+y+ +f+ ++a+l++ er+++E+ g e+ n +aceg+er+er e +++W+e ++ aGF+ ++++ ++++ ak +l++++ + 102071 16 FNSPSLVARAREAFEFYAGMFEDIAASLGESRfaGERRFLEQL-RGLELLNTLACEGDERVERPEGYKQWHELMRGAGFEGYKIKPHVYAGAKQMLATYSnAR 117 699*************************9998989******98.9*******************************************************999 PP GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374 +y+v + ++++l +++ L+++S W+ 102071 118 EYSVGRSGNWILLRRNRQVLIAISNWT 144 **************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 16.008 | 1 | 123 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.4E-23 | 16 | 144 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MEPKLFLNAA FPPVGFNSPS LVARAREAFE FYAGMFEDIA ASLGESRFAG ERRFLEQLRG 60 LELLNTLACE GDERVERPEG YKQWHELMRG AGFEGYKIKP HVYAGAKQML ATYSNAREYS 120 VGRSGNWILL RRNRQVLIAI SNWTS* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002974739.2 | 1e-101 | scarecrow-like protein 31 | ||||
TrEMBL | D8RUR2 | 1e-100 | D8RUR2_SELML; GRAS family protein | ||||
STRING | EFJ24259 | 1e-100 | (Selaginella moellendorffii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29065.1 | 6e-19 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | 102071 |
Entrez Gene | 9637200 |
Publications ? help Back to Top | |||
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