PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 101484
Common NameSELMODRAFT_101484, SELMODRAFT_132315
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB_related
Protein Properties Length: 89aa    MW: 9967.53 Da    PI: 10.1779
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
101484genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.39.7e-201461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd +l+ +++q+G+g+W+t +++ g+ R++k+c++rw +yl
           101484 14 RGPWTPEEDAKLLACIAQHGTGSWRTLPKKAGLQRCGKSCRLRWTNYL 61
                     89********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-26564IPR009057Homeodomain-like
PROSITE profilePS5129425.716965IPR017930Myb domain
SMARTSM007175.3E-141363IPR001005SANT/Myb domain
PfamPF002491.5E-171461IPR001005SANT/Myb domain
SuperFamilySSF466892.49E-231587IPR009057Homeodomain-like
CDDcd001671.19E-111661No hitNo description
Gene3DG3DSA:1.10.10.601.0E-76587IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MGRAPCCEKD SVKRGPWTPE EDAKLLACIA QHGTGSWRTL PKKAGLQRCG KSCRLRWTNY  60
LRPDLKHGRF TDHEEQLIVK LHAALGSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-161488780B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002974331.22e-58transcription factor MYB80
RefseqXP_002990860.22e-58transcription factor MYB80
SwissprotQ7XQN15e-45MYB80_ORYSJ; Transcription factor MYB80
TrEMBLA0A2K1J4Q52e-56A0A2K1J4Q5_PHYPA; Uncharacterized protein
TrEMBLA0A2K1JHJ11e-56A0A2K1JHJ1_PHYPA; Uncharacterized protein
TrEMBLA9RYY78e-58A9RYY7_PHYPA; Predicted protein (Fragment)
TrEMBLD8RTQ71e-58D8RTQ7_SELML; Uncharacterized protein
STRINGPP1S36_198V6.15e-57(Physcomitrella patens)
STRINGPP1S65_211V6.11e-58(Physcomitrella patens)
STRINGEFJ081332e-59(Selaginella moellendorffii)
STRINGEFJ245532e-59(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-46myb domain protein 103
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]