PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 100734
Common NameSELMODRAFT_100734
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB
Protein Properties Length: 147aa    MW: 16859.2 Da    PI: 10.9231
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
100734genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.9e-18955148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+  Ed+ lv++vkq+G+++W++I+  m  +R++kqc++rw ++l
           100734  9 KGQWSLAEDKSLVKLVKQYGTRRWSLISTFMA-NRSGKQCRERWVNHL 55
                     799*****************************.************996 PP
2Myb_DNA-binding60.53.7e-1963103345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       WT+eE+ellv+a+  +G++ W++Ia++++ gRt++++k++w+
           100734  63 GWTKEEEELLVQAHSYFGNK-WSAIAKMLP-GRTDNSIKNHWH 103
                      6*******************.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.184455IPR017930Myb domain
SuperFamilySSF466893.23E-326102IPR009057Homeodomain-like
SMARTSM007176.2E-15857IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-251062IPR009057Homeodomain-like
PfamPF139212.8E-191272No hitNo description
CDDcd001672.79E-131255No hitNo description
PROSITE profilePS5129426.04856110IPR017930Myb domain
SMARTSM007179.8E-1660108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2463111IPR009057Homeodomain-like
CDDcd001674.96E-1264103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MGGQRNRVKG QWSLAEDKSL VKLVKQYGTR RWSLISTFMA NRSGKQCRER WVNHLQPDIR  60
KEGWTKEEEE LLVQAHSYFG NKWSAIAKML PGRTDNSIKN HWHAALRKKV IHLKLQSATT  120
FRMAGSAWQT EVQSFEGIHP AKDGQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-4181103105MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-4181103105C-Myb DNA-Binding Domain
1msf_C1e-4181103105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility. Acts redundantly with MYB64 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5. {ECO:0000269|PubMed:24068955}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395976.17e-58uncharacterized protein LOC112292072
SwissprotQ9FIM45e-42MY119_ARATH; Transcription factor MYB119
TrEMBLD8RS061e-104D8RS06_SELML; Uncharacterized protein
STRINGEFJ247851e-105(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.12e-44myb domain protein 119
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]