PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00030428-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ERF | ||||||||
Protein Properties | Length: 250aa MW: 26332.5 Da PI: 5.5885 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.2 | 1.3e-15 | 91 | 139 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r ++ g+Wv+eIr+p++ ++r++lg++ ++e+Aa+a++ a+++l+g SMil_00030428-RA_Salv 91 IYRGIR--SRGGKWVSEIREPKK---TTRVWLGTYPSPEMAAAAYDVAALALKG 139 69***6..679*********854...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.7E-9 | 90 | 139 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.09E-15 | 90 | 148 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.8E-25 | 91 | 148 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-17 | 91 | 149 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.2E-26 | 91 | 153 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.506 | 91 | 147 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MSQQHNSPYP TPKPTTSPPP PPTPPPPPPA PLSPPPPPPP PHTNTVHSPK DQSQHSQPTI 60 GIESLPSPKK VKTTAAAASS SVRPAGGKHP IYRGIRSRGG KWVSEIREPK KTTRVWLGTY 120 PSPEMAAAAY DVAALALKGP ATAVNFPDRV GEYPVPASPS PSDIRKAAAS AAALMKPEEE 180 APPVDETAAA DGNAETAAGE HEFIDEEALF HMPNLLVDMA EGMLVSPPRM ASPPSEDSPD 240 NSDVESLWSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-13 | 83 | 147 | 6 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011081034.1 | 2e-79 | ethylene-responsive transcription factor ERF026 | ||||
Swissprot | Q9CAN9 | 2e-49 | ERF26_ARATH; Ethylene-responsive transcription factor ERF026 | ||||
TrEMBL | A0A022RGU6 | 5e-77 | A0A022RGU6_ERYGU; Uncharacterized protein | ||||
STRING | Migut.A00921.1.p | 2e-77 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA553 | 22 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 4e-39 | ERF family protein |