PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00030384-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 145aa MW: 16721.9 Da PI: 5.8565 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.2 | 7.8e-20 | 2 | 50 | 8 | 56 |
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++eqle Le+ F+++ +++ +++ +LAk+lgL+ rq+ vWFqNrRa++k SMil_00030384-RA_Salv 2 STEQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWK 50 789*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 115.7 | 2.8e-37 | 1 | 87 | 6 | 92 |
HD-ZIP_I/II 6 lskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ls+eq+++LE+sF+ee kL+p+rK++la+eLglqprq+avWFqnrRAR+k kqlE+ y+aLk+++da+++e+++L++ev +Lr+ lk SMil_00030384-RA_Salv 1 LSTEQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWKGKQLERLYDALKQEFDAVSREKHKLHQEVLALRAILK 87 799********************************************************************************8877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.2 | 1 | 52 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.88E-15 | 1 | 53 | No hit | No description |
SMART | SM00389 | 1.0E-13 | 1 | 56 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-21 | 2 | 59 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.33E-17 | 2 | 53 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.7E-17 | 2 | 50 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 3.5E-6 | 23 | 32 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 27 | 50 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.5E-6 | 32 | 48 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 6.2E-8 | 52 | 86 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
LSTEQLESLE NSFQEEIKLD PDRKMKLAKE LGLQPRQIAV WFQNRRARWK GKQLERLYDA 60 LKQEFDAVSR EKHKLHQEVL ALRAILKDQV AKKQVSTDVS GEETVESTSI PSSEKGRGEG 120 NNQMGECNYV LNVEDYSPLI MTPYN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 44 | 52 | RRARWKGKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011094442.1 | 1e-80 | putative homeobox-leucine zipper protein ATHB-51 | ||||
Swissprot | Q9LZR0 | 1e-45 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A4D8YZW5 | 4e-89 | A0A4D8YZW5_SALSN; Homeobox-leucine zipper protein | ||||
TrEMBL | A0A4D9C620 | 4e-89 | A0A4D9C620_SALSN; Homeobox-leucine zipper protein | ||||
STRING | Migut.J00491.1.p | 2e-78 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3869 | 22 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 4e-48 | homeobox 51 |
Publications ? help Back to Top | |||
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