PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00030322-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C2H2

Protein Properties

Length: 166aa MW: 19430.1 Da PI: 10.8194

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00030322-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.0005	76	98	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C k+F k + ++H +++ SMil_00030322-RA_Salv 76 FMCRKCAKPFAVKGDWRTHEKNC 98 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.87E-5	62	96	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.2E-4	62	96	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MMMMMMMIRC TVWGHGSQYR KGRIPRGTQP TAMLRLPCYC CAAGCKHNIE HPRARPLKDF 60 RTLQTHYKRK HGSKPFMCRK CAKPFAVKGD WRTHEKNCGK IWYCFCGSDF KHKRSLKDHI 120 KAFGRGHGAY GIPTTDFERR RSTPPPTLRI TLPTINYLIL FLHLLF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK071104	1e-110	AK071104.1 Oryza sativa Japonica Group cDNA clone:J023078D20, full insert sequence.
GenBank	AP003626	1e-110	AP003626.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0429G06.
GenBank	AP003711	1e-110	AP003711.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0417G12.
GenBank	AP014962	1e-110	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBank	CP012614	1e-110	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009599843.1	4e-78	PREDICTED: zinc finger protein WIP2-like
Refseq	XP_016459429.1	4e-78	PREDICTED: zinc finger protein WIP2-like
Refseq	XP_016556772.1	2e-78	PREDICTED: zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-73	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A4D9BAM8	4e-80	A0A4D9BAM8_SALSN; Uncharacterized protein
STRING	XP_009599843.1	1e-77	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA462	24	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	4e-75	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]