PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00030313-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | GATA | ||||||||
Protein Properties | Length: 272aa MW: 30001.4 Da PI: 4.9829 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 38.6 | 1.5e-12 | 248 | 272 | 1 | 25 |
GATA 1 CsnCgttkTplWRrgpdgnktLCna 25 C++C++ kTp+WR gp g+ktLCna SMil_00030313-RA_Salv 248 CTHCQVQKTPQWRTGPLGPKTLCNA 272 ************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 9.631 | 242 | 272 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 5.7E-8 | 245 | 272 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.5E-9 | 245 | 272 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.72E-8 | 247 | 272 | No hit | No description |
Pfam | PF00320 | 3.8E-10 | 248 | 272 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MECIEARALK PSFLSQMAMK TNSQVYYNDD VWCLTGVNNV VSDDFPVEDL LNLDLPEKDF 60 QELCFSQEDE EISQKGNSLY SSSSSSNFSG DFDSLSVELA VPVEDLENLE WLSQFVDDST 120 PEVSLLCPAG SFVAQTGAFS LNRSHPVHKL PQAQRIPAPY FPVPIPVKAR SKRPRFTGRP 180 WYLASPPLSS ADSSSTTSSS HGSSTLPTFV WSDTVHDSEW FSSAEKPAAK KQKRKTDADS 240 GPVSGRRCTH CQVQKTPQWR TGPLGPKTLC NA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088480.2 | 1e-117 | GATA transcription factor 5-like | ||||
Refseq | XP_020551667.1 | 1e-117 | GATA transcription factor 5-like | ||||
TrEMBL | A0A4D9C511 | 1e-155 | A0A4D9C511_SALSN; Uncharacterized protein | ||||
STRING | Migut.B00182.1.p | 2e-96 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1154 | 24 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 2e-24 | GATA transcription factor 5 |