PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00030164-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB_related | ||||||||
Protein Properties | Length: 181aa MW: 20518.5 Da PI: 4.2818 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.9 | 2.2e-08 | 24 | 46 | 23 | 46 |
-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46 W++Ia++++ gRt++++k++w++ SMil_00030164-RA_Salv 24 KWSAIAAELP-GRTDNDIKNFWHT 46 4*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.71E-8 | 3 | 51 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.337 | 9 | 52 | IPR017930 | Myb domain |
SMART | SM00717 | 0.0034 | 13 | 50 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.49E-7 | 16 | 46 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-10 | 23 | 47 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.3E-6 | 24 | 46 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MVRSPCFDSN GMKKGAWSED EDSKWSAIAA ELPGRTDNDI KNFWHTRVAR RRKPNSAASS 60 SSSSSYHKLL EMAPNLHQND ATKIQESMLA FECDTNSSAT QSQFDLWDDE FPAEFPNYAD 120 FPPLILEEEF CYPQFYYKDW FADEDHSIMF NAVGGSIWDE SFALTTSDSQ PQSRVCVPLG 180 G |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65790.1 | 6e-11 | myb domain protein 68 |