PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00030163-RA_Salv
Common NameMYB102
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 119aa    MW: 13975.1 Da    PI: 10.9183
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00030163-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-161461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+W++eEd++l   v+++G ++W++ ++  g+ R++k+c++rw +yl
  SMil_00030163-RA_Salv 14 KGAWSKEEDDRLRAQVERFGHDNWRRLPSLAGLARCGKSCRLRWMNYL 61
                           79********************************************97 PP
2Myb_DNA-binding445e-1467110146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg++T+ E+e +++++ qlG++ W++ a+++  gR+++++k++w+ 
  SMil_00030163-RA_Salv  67 RGKFTKIEEEHIIKLHDQLGNK-WSAMAAKLH-GRSDNEIKNYWHA 110
                            89********************.*********.***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-21864IPR009057Homeodomain-like
PROSITE profilePS5129422.979965IPR017930Myb domain
SuperFamilySSF466897.81E-2911108IPR009057Homeodomain-like
SMARTSM007176.6E-121363IPR001005SANT/Myb domain
PfamPF002494.6E-151461IPR001005SANT/Myb domain
CDDcd001671.30E-81661No hitNo description
Gene3DG3DSA:1.10.10.605.5E-2465115IPR009057Homeodomain-like
SMARTSM007173.4E-1166114IPR001005SANT/Myb domain
PROSITE profilePS5129414.71866116IPR017930Myb domain
PfamPF002493.0E-1267110IPR001005SANT/Myb domain
CDDcd001671.94E-669112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MVRAPTFDSN GIKKGAWSKE EDDRLRAQVE RFGHDNWRRL PSLAGLARCG KSCRLRWMNY  60
LKPGLKRGKF TKIEEEHIIK LHDQLGNKWS AMAAKLHGRS DNEIKNYWHA HIKKRGRCH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-21141157107B-MYB
1h8a_C7e-211211525127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269|PubMed:28062835}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold stress and flooding. {ECO:0000269|PubMed:28062835}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594560.0KF059456.1 Salvia miltiorrhiza MYB-related transcription factor (MYB102) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100426.11e-63myb-related protein 308-like
SwissprotQ6K1S68e-49MYB30_ORYSJ; Transcription factor MYB30
TrEMBLA0A059PRV41e-82A0A059PRV4_SALMI; MYB-related transcription factor (Fragment)
STRINGMigut.M00366.1.p2e-60(Erythranthe guttata)
STRINGMigut.M00367.1.p1e-60(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.13e-50myb domain protein 15
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]
  4. Lv Y, et al.
    The OsMYB30 Transcription Factor Suppresses Cold Tolerance by Interacting with a JAZ Protein and Suppressing β-Amylase Expression.
    Plant Physiol., 2017. 173(2): p. 1475-1491
    [PMID:28062835]