PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00030017-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

HD-ZIP

Protein Properties

Length: 151aa MW: 17112 Da PI: 10.9847

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00030017-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.3	4.6e-17	3	55	5	57
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++eq++ Le+ F +++ e++ +LA+ lg++ rq+ +W+qN+Ra++k+ SMil_00030017-RA_Salv 3 KRLNQEQVRLLEASFDAGKKLEPERKFQLARDLGVPPRQIAIWYQNKRARWKN 55 4689***********************************************95 PP
2	HD-ZIP_I/II	103.8	1.4e-33	2	92	3	93
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 k+rl++eqv+lLE sF++ +kLeperK +lar+Lg+ prq+a+W+qn+RAR+k++ lE d+ a++ ++da +e+++Lek+v+ L+ elk SMil_00030017-RA_Salv 2 KKRLNQEQVRLLEASFDAGKKLEPERKFQLARDLGVPPRQIAIWYQNKRARWKNQSLELDHGAIQVRLDAALAEKRELEKQVDMLQVELK 91 99************************************************************************************9998 PP HD-ZIP_I/II 93 e 93 + SMil_00030017-RA_Salv 92 R 92 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	1.1E-10	1	60	IPR001356	Homeobox domain
PROSITE profile	PS50071	15.499	1	56	IPR001356	Homeobox domain
CDD	cd00086	2.72E-11	2	57	No hit	No description
Pfam	PF00046	2.0E-14	3	55	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.55E-16	3	62	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.7E-18	4	60	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	31	54	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MKKRLNQEQV RLLEASFDAG KKLEPERKFQ LARDLGVPPR QIAIWYQNKR ARWKNQSLEL 60 DHGAIQVRLD AALAEKRELE KQVDMLQVEL KRAQDMLFGF RQAQAQAGGG GGGLPCRRCR 120 VAATREVAAP ALMMTWAARP TGPMWKSSML V

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011082709.1	3e-51	homeobox-leucine zipper protein ATHB-52
Swissprot	Q9FN29	5e-31	ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52
TrEMBL	A0A4D8Z868	2e-58	A0A4D8Z868_SALSN; Homeobox-leucine zipper protein
STRING	Migut.M00776.1.p	5e-49	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2715	24	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	7e-33	homeobox protein 52