PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00029960-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | B3 | ||||||||
Protein Properties | Length: 211aa MW: 24206.6 Da PI: 9.0931 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.3 | 2.1e-16 | 18 | 99 | 16 | 95 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgr....yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 l lpk f++++g++ s +++l+++sg sW+v+l r + + y++t+GW + +++ +Lk+ +++vF + ++s+f +v SMil_00029960-RA_Salv 18 LLLPKGFTDKYGEN--LSEKVRLRNKSGTSWNVRLEKmREEG-EetdaYYFTRGWTKSCNDVDLKTFEVLVFFYAENSTFDVTVY 99 89*********966..889****************6643333.24678**************************99999966665 PP | |||||||
2 | B3 | 32.5 | 1.5e-10 | 127 | 194 | 12 | 83 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 + + + +pk+f +++g+k++ ++++le + g s +vk+ + + gr+ +++GW++F kan+ + + ++ SMil_00029960-RA_Salv 127 NYHKFHVPKDFSDACGLKEK--REVRLECRGGSSARVKV--NSCNGRVDFGGGWSGFLKANNFAINKTYSLE 194 457799**********9955..58***************..99999****************9999887776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.323 | 3 | 102 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.9E-18 | 4 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.12E-16 | 5 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.04E-13 | 5 | 99 | No hit | No description |
SMART | SM01019 | 1.6E-7 | 7 | 102 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.2E-14 | 18 | 100 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.051 | 118 | 207 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.14E-11 | 120 | 196 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-11 | 123 | 196 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.1E-8 | 127 | 194 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 7.401 | 133 | 211 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MDTRPSFYKI LMDLPPKLLL PKGFTDKYGE NLSEKVRLRN KSGTSWNVRL EKMREEGEET 60 DAYYFTRGWT KSCNDVDLKT FEVLVFFYAE NSTFDVTVYA VTALEKEPAG FRAAANPMCR 120 FDLKQHNYHK FHVPKDFSDA CGLKEKREVR LECRGGSSAR VKVNSCNGRV DFGGGWSGFL 180 KANNFAINKT YSLEFLPAKN VIRVGPDYLL Y |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6635 | 9 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53310.1 | 3e-07 | B3 family protein |