PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00029947-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

FAR1

Protein Properties

Length: 455aa MW: 52437 Da PI: 6.9182

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00029947-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.5	1.1e-23	37	132	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkl 81 +fY++Y++ GF +r+s+ +k ++g+i f C++eg + ++++k ++++rr++++tr gCka++kv++++ dgk++vt++ SMil_00029947-RA_Salv 37 EFYKKYGSASGFGTRRSSARKG-KHGQILYTYFICTREGVKPKSQEKvtesstRKTKRRRKPSTRNGCKATIKVNLRDdDGKYVVTRF 123 6**************99998.6677**********999999999998889999***************9***** PP FAR1 82 eleHnHela 90 ++ HnHel+ SMil_00029947-RA_Salv 124 DESHNHELV 132 *****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.0E-21	37	132	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.3E-8	254	294	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MDNPDSECGA KSYLPVCESS KKPYIGQLFT SVDDAYEFYK KYGSASGFGT RRSSARKGKH 60 GQILYTYFIC TREGVKPKSQ EKVTESSTRK TKRRRKPSTR NGCKATIKVN LRDDDGKYVV 120 TRFDESHNHE LVSDECRPFM KQNRKIDQSH QVIMLSCAKA NIGPMRAFRI FKELVGGYDD 180 VGCTSKDFKN ASYDLNSHAD GFDAQLLLDR FISKRECDDG FKCKYLTDEF DKVKSLFWCD 240 SIGVQNYSVF GDAVSFDATY STNRYDMIFT PFTGKDNHGG CVTFAAGLLN KEDVNFDEPD 300 DFEKKWAEVL DEYELEDHTW FQDMFSKRTY WIPAYFRELS MSGLFRTTSL SESENSFFRK 360 YLNRTSNLAA FYIHFESAMD AQRQTFKQLC MVDQTTVPHI ETHIPLEQHA AVIYTRKKFL 420 EVQIEIMEAV NRCCIKTMDT DDGEHRMPSI APTAQ

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MDNPDSECGA KSYLPVCESS KKPYIGQLFT SVDDAYEFYK KYGSASGFGT RRSSARKGKH  60
GQILYTYFIC TREGVKPKSQ EKVTESSTRK TKRRRKPSTR NGCKATIKVN LRDDDGKYVV  120
TRFDESHNHE LVSDECRPFM KQNRKIDQSH QVIMLSCAKA NIGPMRAFRI FKELVGGYDD  180
VGCTSKDFKN ASYDLNSHAD GFDAQLLLDR FISKRECDDG FKCKYLTDEF DKVKSLFWCD  240
SIGVQNYSVF GDAVSFDATY STNRYDMIFT PFTGKDNHGG CVTFAAGLLN KEDVNFDEPD  300
DFEKKWAEVL DEYELEDHTW FQDMFSKRTY WIPAYFRELS MSGLFRTTSL SESENSFFRK  360
YLNRTSNLAA FYIHFESAMD AQRQTFKQLC MVDQTTVPHI ETHIPLEQHA AVIYTRKKFL  420
EVQIEIMEAV NRCCIKTMDT DDGEHRMPSI APTAQ

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3136	2	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-32	FAR1-related sequence 5