PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00029915-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NF-YB
Protein Properties Length: 157aa    MW: 17551.5 Da    PI: 4.8782
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00029915-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB163.14e-5135129397
                  NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 
                            eq+r++Pianv+rimk++lP nak+sk+aket+qecvsefi+fvt+eas+kc++e+rkt+ngdd++wa+atlGf+dy+ pl+ yl++y
  SMil_00029915-RA_Salv  35 EQERLVPIANVGRIMKQILPPNAKVSKEAKETMQECVSEFIGFVTGEASEKCRKERRKTVNGDDVCWAMATLGFDDYAPPLRRYLERY 122
                            89************************************************************************************** PP

                  NF-YB  91 relegek 97 
                            rele ++
  SMil_00029915-RA_Salv 123 RELEVDR 129
                            ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.7E-4931151IPR009072Histone-fold
SuperFamilySSF471136.45E-3736149IPR009072Histone-fold
PfamPF008089.0E-2640103IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.2E-166785No hitNo description
PRINTSPR006151.2E-1686104No hitNo description
PRINTSPR006151.2E-16105123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MSTSNNNNDN NNSFDSSKAV FSISMAESGS SLAGEQERLV PIANVGRIMK QILPPNAKVS  60
KEAKETMQEC VSEFIGFVTG EASEKCRKER RKTVNGDDVC WAMATLGFDD YAPPLRRYLE  120
RYRELEVDRV NQNKAGNSGE MDDNLLYTQN KPQRDSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-4135124392Transcription factor HapC (Eurofung)
4g92_B3e-4135124392Transcription factor HapC (Eurofung)
5g49_A3e-4135124897NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091059.26e-70nuclear transcription factor Y subunit B-5-like
SwissprotO822482e-55NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A4D9BL242e-71A0A4D9BL24_SALSN; Uncharacterized protein
STRINGcassava4.1_018746m6e-63(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.14e-49nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]