PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00029750-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ERF | ||||||||
Protein Properties | Length: 183aa MW: 20206.6 Da PI: 9.5662 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.5 | 5.2e-21 | 65 | 115 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdps+ng +r++lg++ taeeAa a+++a+ ++g SMil_00029750-RA_Salv 65 HYRGVRQRP-WGKFAAEIRDPSKNG--ARVWLGTYETAEEAALAYDQAAYTMRG 115 7********.***********9998..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.61E-28 | 64 | 123 | No hit | No description |
PROSITE profile | PS51032 | 23.986 | 65 | 123 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-15 | 65 | 115 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.1E-39 | 65 | 129 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-32 | 65 | 123 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-23 | 65 | 125 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.5E-11 | 66 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 89 | 105 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MTFQNDDHYE ADLALLDTIR RYLLDDMGPL DATVKPEPEP EPEPQLSFLS FQAVAAQPAA 60 PRGAHYRGVR QRPWGKFAAE IRDPSKNGAR VWLGTYETAE EAALAYDQAA YTMRGSRAML 120 NFPLRVNSGE PPPVRITSKR STASSSSDSS GSPQKRKTAA AADGLKKKRT SSAISQERFP 180 IFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-40 | 62 | 130 | 2 | 70 | ATERF1 |
3gcc_A | 3e-40 | 62 | 130 | 2 | 70 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 154 | 168 | KRKTAAAADGLKKKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011081402.2 | 1e-61 | ethylene-responsive transcription factor 1A-like | ||||
Swissprot | O80337 | 4e-49 | EF100_ARATH; Ethylene-responsive transcription factor 1A | ||||
TrEMBL | A0A4D9BCU6 | 2e-60 | A0A4D9BCU6_SALSN; EREBP-like factor | ||||
STRING | Solyc08g007230.1.1 | 3e-52 | (Solanum lycopersicum) | ||||
STRING | PGSC0003DMT400005836 | 3e-52 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 1e-33 | ethylene responsive element binding factor 1 |
Publications ? help Back to Top | |||
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