PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00029708-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | HB-other | ||||||||
Protein Properties | Length: 119aa MW: 13702.3 Da PI: 7.0762 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 32.5 | 1.5e-10 | 66 | 105 | 1 | 40 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS- CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLt 40 r+k +++t+ q++eLe++F+ n++p++++r eL k+lgL SMil_00029708-RA_Salv 66 RKKYHRHTAFQIQELEACFKDNPHPDEKARLELGKRLGLR 105 7999**********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.9E-13 | 51 | 105 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.03E-9 | 52 | 105 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.556 | 63 | 119 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.8E-8 | 66 | 105 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.10E-8 | 66 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MFMFMFLWRQ PKMENLGEMG LLGESHDSGL IGRTREDELE SRSGSDNFEG ASGDDENATH 60 NKSSKRKKYH RHTAFQIQEL EACFKDNPHP DEKARLELGK RLGLRAGRSN FGFRTEEPK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076208.1 | 4e-52 | homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
Swissprot | Q0WV12 | 9e-25 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | A0A4D9BN74 | 1e-50 | A0A4D9BN74_SALSN; Homeobox-leucine zipper protein | ||||
STRING | XP_002510822.1 | 2e-37 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 4e-27 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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