PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00029646-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 235aa    MW: 26445.5 Da    PI: 9.4872
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00029646-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.6e-18137187255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            +y+GVr+++ +g+++AeIr p +    +r +lg++ t+eeAa a+++a+ kl+g
  SMil_00029646-RA_Salv 137 RYRGVRRRP-WGKFAAEIRNPDKK--GARLWLGTYETPEEAAVAYDRAAFKLRG 187
                            8********.**********8553..4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.95E-33136197No hitNo description
SMARTSM003801.7E-36137201IPR001471AP2/ERF domain
PROSITE profilePS5103224.5137195IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-23137196IPR016177DNA-binding domain
PfamPF008472.3E-13137187IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-31137196IPR001471AP2/ERF domain
PRINTSPR003676.4E-13138149IPR001471AP2/ERF domain
PRINTSPR003676.4E-13177197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MQDSSINVPS FVLKSTFIST FTKRPNSADP QCQKKSPTFL PFSSSKEGNK VLEDTSRLCR  60
FDVEPLLSLI PNRLSFRAID FDFVFDSSPA DSPLNATPIT DESDHSSQMI EELLSDESDS  120
AGSEEPPQSV AAAEWKRYRG VRRRPWGKFA AEIRNPDKKG ARLWLGTYET PEEAAVAYDR  180
AAFKLRGSRA RVNFPHLIGS GVSEPTRVTK RRRSSQDQKN SFSQSLKHAR KENEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-29133201169ATERF1
3gcc_A8e-29133201169ATERF1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094418.13e-61ethylene-responsive transcription factor 13-like
TrEMBLA0A4D8ZUJ81e-68A0A4D8ZUJ8_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.14e-41ethylene-responsive element binding factor 13