PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00029546-RA_Salv | ||||||||
Common Name | MYB27 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB | ||||||||
Protein Properties | Length: 243aa MW: 27660.5 Da PI: 8.7057 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.5 | 9.9e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+ +++ +G+g +W + + ++g++R++k+c++rw++yl SMil_00029546-RA_Salv 14 RGPWSPEEDAKLKSYIENHGTGgNWIALPPKIGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 38.4 | 2.9e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T++Ed l+ + G++ W+ Ia+ ++ gRt++++k++w++ SMil_00029546-RA_Salv 69 GGFTEDEDNLICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.339 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.7E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.59E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.532 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 6.6E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.48E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPE EDAKLKSYIE NHGTGGNWIA LPPKIGLKRC GKSCRLRWLN 60 YLRPNLKHGG FTEDEDNLIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLVR 120 QRRRQSQPKK QVQNYSIING YNQLPILDDA ATMQLPALGP PFSCNTTPFH HYACVEDQHL 180 YANPLLMNPS ASTSFVDAGF RAFDRMPQEM LDGFDMSCVV DQAPEISSYE VYQRNWGLLG 240 YSE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-24 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 123 | KKKLLVRQRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF059381 | 0.0 | KF059381.1 Salvia miltiorrhiza MYB-related transcription factor (MYB27) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010679693.1 | 2e-85 | PREDICTED: transcription factor RAX3 | ||||
Swissprot | Q9M2Y9 | 5e-80 | RAX3_ARATH; Transcription factor RAX3 | ||||
TrEMBL | A0A059PRQ1 | 0.0 | A0A059PRQ1_SALMI; MYB-related transcription factor | ||||
STRING | XP_010679693.1 | 6e-85 | (Beta vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 1e-75 | myb domain protein 84 |
Publications ? help Back to Top | |||
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