PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00029531-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ERF | ||||||||
Protein Properties | Length: 198aa MW: 22725.9 Da PI: 4.2151 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.5 | 1.9e-19 | 28 | 79 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +grW+AeIrdp + +r++lg+++taeeAa ++aa+ +++g SMil_00029531-RA_Salv 28 KKFRGVRRRP-WGRWAAEIRDPAR---HgARVWLGTYDTAEEAAMIYDAAAIQIRG 79 59********.**********943...24************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 3.6E-33 | 1 | 192 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
CDD | cd00018 | 8.95E-30 | 28 | 86 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.7E-30 | 29 | 87 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.513 | 29 | 87 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.3E-14 | 29 | 79 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.69E-23 | 29 | 87 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.0E-34 | 29 | 93 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-10 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-10 | 53 | 69 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MKSDAEEEEE KKKKRRPPPA TETERREKKF RGVRRRPWGR WAAEIRDPAR HGARVWLGTY 60 DTAEEAAMIY DAAAIQIRGA NAVTNFSPPS TDTAAPAEDY GDACEFVRFD FGDSKHDDAK 120 LSCSRFESVD PKEEDLFSSD DFLSLGDEYL LNDDLDFRSQ LNCDEIRLRE QVLDDDFSCV 180 DIDLGDDFAW DLNELLAW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-22 | 28 | 86 | 4 | 62 | ATERF1 |
3gcc_A | 2e-22 | 28 | 86 | 4 | 62 | ATERF1 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 9 | 16 | EKKKKRRP |
2 | 10 | 15 | KKKKRR |
3 | 11 | 15 | KKKRR |
4 | 11 | 16 | KKKRRP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093108.1 | 4e-36 | pathogenesis-related genes transcriptional activator PTI6 | ||||
TrEMBL | A0A4D9BAW0 | 2e-45 | A0A4D9BAW0_SALSN; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA494 | 23 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11140.1 | 1e-13 | cytokinin response factor 1 |