PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00029475-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

ERF

Protein Properties

Length: 373aa MW: 41694.1 Da PI: 4.335

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00029475-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	32.3	2.5e-10	74	102	27	55
AP2 27 krkrfslgkfgtaeeAakaaiaarkkleg 55 ++ r++lg+f+taeeAa+a+++a+ l+g SMil_00029475-RA_Salv 74 QKIRVWLGTFDTAEEAARAYDEAACLLRG 102 4589********************99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	12.998	42	110	IPR001471	AP2/ERF domain
SMART	SM00380	2.3E-14	53	116	IPR001471	AP2/ERF domain
Pfam	PF00847	2.0E-6	70	102	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.81E-11	73	110	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.9E-16	74	109	IPR001471	AP2/ERF domain
CDD	cd00018	3.46E-18	74	109	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MKQMARKRKA CDFVDDEEKL NPREKNLSPK WDEMVKEAAA VAAVGGIRRA RKRFVGSPPT 60 PLGALGGGDK GTIQKIRVWL GTFDTAEEAA RAYDEAACLL RGANTRTNFW PTNSNSSSTP 120 ALSSKITNLL LSRIKARNSA LITANYITTL HPSSSVSLTP PVSQEHAATG DTGEIPDFSE 180 SSFTDFLNDP DENYTIENNM IDHKYSSFDS FATQADEKSD ETEVDDEMMV MMEPVDFQFV 240 DEIGSSIEYS AFEIAEEISR PMVQEDEQLM LSEAMKRMNY ERKFSASLYA FNGINECLKL 300 SSSSTRCDRS EQLTRLRNAC KMNREEATNN NNNSNDELAR ENEEDENADV GSNFDGESML 360 WNSIDLPTIC YVN

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MKQMARKRKA CDFVDDEEKL NPREKNLSPK WDEMVKEAAA VAAVGGIRRA RKRFVGSPPT  60
PLGALGGGDK GTIQKIRVWL GTFDTAEEAA RAYDEAACLL RGANTRTNFW PTNSNSSSTP  120
ALSSKITNLL LSRIKARNSA LITANYITTL HPSSSVSLTP PVSQEHAATG DTGEIPDFSE  180
SSFTDFLNDP DENYTIENNM IDHKYSSFDS FATQADEKSD ETEVDDEMMV MMEPVDFQFV  240
DEIGSSIEYS AFEIAEEISR PMVQEDEQLM LSEAMKRMNY ERKFSASLYA FNGINECLKL  300
SSSSTRCDRS EQLTRLRNAC KMNREEATNN NNNSNDELAR ENEEDENADV GSNFDGESML  360
WNSIDLPTIC YVN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098777.1	1e-140	ethylene-responsive transcription factor 10-like
TrEMBL	A0A4D9BU19	1e-176	A0A4D9BU19_SALSN; EREBP-like factor
STRING	EOY03545	1e-96	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4310	20	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19790.1	4e-10	related to AP2 11