PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00029246-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ERF | ||||||||
Protein Properties | Length: 249aa MW: 27459 Da PI: 7.5092 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.7 | 3.2e-19 | 107 | 157 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+++AeIrdp + k +r++lg+f+ta eAaka+++a+ +l+g SMil_00029246-RA_Salv 107 HFRGVRQRP-WGKFAAEIRDP---NrKGTRVWLGTFDTAMEAAKAYDRAAFQLRG 157 69*******.**********9...6566*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.9E-32 | 106 | 166 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.6E-14 | 107 | 157 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-23 | 107 | 167 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.788 | 107 | 165 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.0E-37 | 107 | 171 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.42E-29 | 107 | 165 | No hit | No description |
PRINTS | PR00367 | 2.5E-10 | 108 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-10 | 131 | 147 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MSNTLIMASP DETSALDLIR QHLLDDFAFA ETYCSSQSQI SRTSSSTSSN LSDLTTGDCF 60 EFETKPHIAM REKAKPALNI AIPKVTNKAA LIHLAGAAVE DSGDRRHFRG VRQRPWGKFA 120 AEIRDPNRKG TRVWLGTFDT AMEAAKAYDR AAFQLRGSKA ILNFPLEIGS MDQSAVPQIE 180 AVVCRKRRRD GEGEERERKE VKTESSELTA AVPLTPSSWT AVWDGGEGKG IFEVPPLSPY 240 PQMSSVIRV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-30 | 106 | 170 | 4 | 68 | ATERF1 |
3gcc_A | 3e-30 | 106 | 170 | 4 | 68 | ATERF1 |
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Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 184 | 188 | RKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00556 | DAP | Transfer from AT5G51190 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011101098.1 | 3e-87 | ethylene-responsive transcription factor 5 | ||||
Swissprot | Q9LW48 | 4e-78 | ERF5_NICSY; Ethylene-responsive transcription factor 5 | ||||
TrEMBL | A0A4D9C625 | 4e-93 | A0A4D9C625_SALSN; EREBP-like factor | ||||
STRING | Migut.F00527.1.p | 4e-84 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA963 | 23 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 3e-53 | ERF family protein |