PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00029167-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 297aa    MW: 32250.5 Da    PI: 6.9465
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00029167-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78.2e-20118167255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            +y GVr+++ +g+W+AeIrdp     + +r++lg+f tae+Aa+a+++a+++++g
  SMil_00029167-RA_Salv 118 RYIGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFNTAEDAARAYDEAALRFRG 167
                            699******.**********93....36*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-22118176IPR016177DNA-binding domain
PfamPF008471.1E-13118167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-32118176IPR001471AP2/ERF domain
CDDcd000181.47E-32118177No hitNo description
SMARTSM003801.9E-35118181IPR001471AP2/ERF domain
PROSITE profilePS5103224.777118175IPR001471AP2/ERF domain
PRINTSPR003671.8E-10119130IPR001471AP2/ERF domain
PRINTSPR003671.8E-10141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MASPSMTEMS AMVTALTHVV SSQPQNGGGI SSSYGGGDFV QASINSPSSA YSSSSSASAS  60
GRKRRHDRQD CAAEFSENFY SFRAAKSEPA AAAAEQTPPP ESSSYTASYP ETGERRRRYI  120
GVRQRPWGKW AAEIRDPQKA ARVWLGTFNT AEDAARAYDE AALRFRGRRA KLNFPENVRI  180
LPPPQPSQYS TQFTISAPPP PPTAAAPQQS FFQTAGSDYL EYSELLGSRG DLQLGHPPAT  240
LFENMLYASS LAGLYSHYSS SVSSYQEQGV GDSRNFPAPP WNSGIYLLTC DLEMNIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22117178466ATERF1
3gcc_A1e-22117178466ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16068GRKRRHDRQ
2113118ERRRRY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00289DAPTransfer from AT2G33710Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101230.15e-66ethylene-responsive transcription factor ABR1-like
TrEMBLA0A4D8ZF015e-70A0A4D8ZF01_SALSN; EREBP-like factor
STRINGPGSC0003DMT4000163062e-45(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43222140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-27ethylene response factor 110