PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00029148-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Nin-like

Protein Properties

Length: 1098aa MW: 121228 Da PI: 5.7993

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00029148-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.3	3.5e-29	604	655	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRqyGI+RWP+Rki+++ SMil_00029148-RA_Salv 604 AEKHVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQYGISRWPSRKINKV 655 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.938	594	675	IPR003035	RWP-RK domain
Pfam	PF02042	1.9E-25	608	655	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.92E-21	912	1003	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.0E-21	918	1000	No hit	No description
PROSITE profile	PS51745	19.335	918	1000	IPR000270	PB1 domain
SMART	SM00666	3.6E-21	918	1000	IPR000270	PB1 domain
Pfam	PF00564	3.7E-17	920	999	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1098 aa Download sequence Send to blast
LGTLVKMEYP FSSLEKGNEF PFVPRNGVGD MAARSTDNSV QGSNLEDSFG NVVELMNFDT 60 YAGWCSSPSN LVDQMFPSFS NLSPLDGLNF TQQHNSGISI LDSDVNGSSS MNEDKVMLHN 120 MDYQIPFATS PVDDGFSLTE MRDRSTKRKN LIGDVGHSVI PRPPIQSLSE KMLRALNLFK 180 EWSGGGILAQ VWVPMKNGDH YVLSTSEQPY LLDQTLSGYR EVSRAFTFAA ESKAGSFSGL 240 PSRVFASRIP EWTSNITYYN KAEYHRVQYA IDHEVRGSIA IPVFDDELLE RPCCAVLELV 300 TTMEKSNFDL EMENVCRALQ AVNLRSTATP RLFPQSLSKN QRAALAEITD VLRAVCYAHR 360 LPLALTWIPC CYIAGQGEGT MKIHARGYNR SANEKNVLCI EDSACYVNDK DMKGFVHACR 420 EHYLEEGQGI VGKALQSNHP FFYPDVREYH ISEYPLVHHA RKFGLNAAVA IRLRSTYTGD 480 DDYILEFFLP VNMKGSTEQQ LLLNNLSGTM QRICKSLRTV SDTELHGIDD SKVKLQDSEI 540 RNISSISVSG RSSEQSFLGE NMKNVDPITQ NVVGSTITRK EADGPHQQNV PGLRKQVEKK 600 RSTAEKHVSL SVLQQYFSGS LKDAAKSIGV CPTTLKRICR QYGISRWPSR KINKVNRSLR 660 KIQSVLDSVQ GVEGGLKFDP AIGGLVPAGP IIQEFDARKR SVMPNKGDMI RDCDLVQNAK 720 SALTSSCMDI PTSIVKMEDE CLLDGAQMVG ECEPRPPHLP SSEHSRSAAP DAGLSRPISL 780 NSVCWTTSPN VLASSFLPTE TLNRWVFNNK SHFSSQNSLA VGDEMDTRSK DEIVMDRDDG 840 VVEHNQYSEM DTRSKDEIVI DRDDGVVEHN QPSSSGMTDS SDGYGSGSLM NNSSSSSRSS 900 GKRQNHKSET GYVDSGSKIV VKATYKDDTV RFKFDTASGC ILLYEEIAKR FKLQVGQFQL 960 KYLDDEEEWV MLVSDSDLQE CLEILDFVGS RSVKFLVRDV ASAMGSSVSA ILDHRSFALV 1020 TIVDAVVALS CEALRAGASP FNLMDSGDGS TAKDVVAVAS DFKVFFNGSK LVNSGKKLSD 1080 ASVAEIQSLH GDFRDVSG

Sequence ? help Back to Top

Protein Sequence Length: 1098 aa Download sequence Send to blast

LGTLVKMEYP FSSLEKGNEF PFVPRNGVGD MAARSTDNSV QGSNLEDSFG NVVELMNFDT  60
YAGWCSSPSN LVDQMFPSFS NLSPLDGLNF TQQHNSGISI LDSDVNGSSS MNEDKVMLHN  120
MDYQIPFATS PVDDGFSLTE MRDRSTKRKN LIGDVGHSVI PRPPIQSLSE KMLRALNLFK  180
EWSGGGILAQ VWVPMKNGDH YVLSTSEQPY LLDQTLSGYR EVSRAFTFAA ESKAGSFSGL  240
PSRVFASRIP EWTSNITYYN KAEYHRVQYA IDHEVRGSIA IPVFDDELLE RPCCAVLELV  300
TTMEKSNFDL EMENVCRALQ AVNLRSTATP RLFPQSLSKN QRAALAEITD VLRAVCYAHR  360
LPLALTWIPC CYIAGQGEGT MKIHARGYNR SANEKNVLCI EDSACYVNDK DMKGFVHACR  420
EHYLEEGQGI VGKALQSNHP FFYPDVREYH ISEYPLVHHA RKFGLNAAVA IRLRSTYTGD  480
DDYILEFFLP VNMKGSTEQQ LLLNNLSGTM QRICKSLRTV SDTELHGIDD SKVKLQDSEI  540
RNISSISVSG RSSEQSFLGE NMKNVDPITQ NVVGSTITRK EADGPHQQNV PGLRKQVEKK  600
RSTAEKHVSL SVLQQYFSGS LKDAAKSIGV CPTTLKRICR QYGISRWPSR KINKVNRSLR  660
KIQSVLDSVQ GVEGGLKFDP AIGGLVPAGP IIQEFDARKR SVMPNKGDMI RDCDLVQNAK  720
SALTSSCMDI PTSIVKMEDE CLLDGAQMVG ECEPRPPHLP SSEHSRSAAP DAGLSRPISL  780
NSVCWTTSPN VLASSFLPTE TLNRWVFNNK SHFSSQNSLA VGDEMDTRSK DEIVMDRDDG  840
VVEHNQYSEM DTRSKDEIVI DRDDGVVEHN QPSSSGMTDS SDGYGSGSLM NNSSSSSRSS  900
GKRQNHKSET GYVDSGSKIV VKATYKDDTV RFKFDTASGC ILLYEEIAKR FKLQVGQFQL  960
KYLDDEEEWV MLVSDSDLQE CLEILDFVGS RSVKFLVRDV ASAMGSSVSA ILDHRSFALV  1020
TIVDAVVALS CEALRAGASP FNLMDSGDGS TAKDVVAVAS DFKVFFNGSK LVNSGKKLSD  1080
ASVAEIQSLH GDFRDVSG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073897.1	0.0	protein NLP9
TrEMBL	A0A4D9C4G6	0.0	A0A4D9C4G6_SALSN; Uncharacterized protein
STRING	Migut.N03106.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3981	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein